BAC Information

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BAC

Clone NameMSMg01-263D11
Chromosome1 (Build37)
Map Location 63,725,100 - 63,725,410
singlet/doubletsinglet
Overlap geneGm215
Upstream geneNrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23
Downstream geneMdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263D11.T7 (MSMg01no263_d11.b1)MSMg01-263D11.TJ (MSMg01no263_d11.g1)
ACCAG405101AG405102
length746752
length of high quality
(start - end)
315 (50 - 364)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no263_d11.b1 PHD_FILE: MSMg01no263_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:04 2005CHROMAT_FILE: MSMg01no263_d11.g1 PHD_FILE: MSMg01no263_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTCTATAGAACAGCCTTCAAATTACGATCTGTGCAAACTC
TTTGCCAATGTAAGTACAAGTTCTTTGTAACACTCGAGACAATCTGACCC
TAATGTGTGATGTTCAGTTCATGAAGAGAAGCAAAATCTGCCCCACACAG
GTAACTTCCTGGATCAGGAAAGTGGGACCTGTGCATTGAAGCCATTGGTA
ACATACAGGAGATGGGGGTGGAGAAGAGACCATTGTAAGCATTCCACTCA
TATGTTGCTTCACTGACAGTAATAGGAAAGGTAGGCAAGAATTTTTGAAA
GCAAAAAGCTCCAAACTCTTTTATAAAGCCCCCCCCCCAGCTCCAGGTAG
CAAGATCCAGAGACTATCACTATTCGGAATCTTGAGAGATTAATGGACCA
CTCTTTTATCTGCATGACTGTAATTTAGAACTCTCACAAGACAAGAACCC
CCTGCATTCCAGATGCCAGGCCCAGATGATAGAAGCTTGTGATCAATGAC
AAAAACAAAAAAAAAAAGTTTACAGCTGCTGCCACCTGTGGCCAGGTTTT
ATTGAAGAGGCATTCATGAAACCTGCTCCCCTATGCCATAGACTCTCCCT
TCAAAGCAATATCAGAAAACAAATAAAAAATTTTATTATGCTGGGTGGAT
TCCTTATCTGTGAGGGTGATTTATGAAGTATTGAGATGCTCTGGTN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTTGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCATGAAATTGGACATAGTACTACTGGAGGATCCA
GCAATACTTTTTCTGTGCATACCTCCCCACCATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGAAAACTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGAAACTCACACAATATGCACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCT
AAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_d11.b1 MSMg01no263_d11.b1 CHROMAT_FILE:
MSMg01no263_d11.b1 PHD_FILE: MSMg01no263_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:04 2005
         (315 letters)



>mm_chr1_63724896_63725610
          Length = 715

 Score =  555 bits (287), Expect = e-162
 Identities = 305/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtctatagaacagccttcaaattacgatctgtgcaaactctttgccaatgtaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctgtctatagaacagccttcaaattacgatctgtgcaaactctttgccaatgtaa 456

                                                                       
Query: 65  gtacaagttctttgtaacactcgagacaatctgaccctaatgtgtgatgttcagttcatg 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 455 gtacaagttctttgtaacactcaagacaatctgaccctaatgtgtgatgttcagttcatg 396

                                                                       
Query: 125 aagagaagcaaaatctgccccacacaggtaacttcctggatcaggaaagtgggacctgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aagagaagcaaaatctgccccacacaggtaacttcctggatcaggaaagtgggacctgtg 336

                                                                       
Query: 185 cattgaagccattggtaacatacaggagatgggggtggagaagagaccattgtaagcatt 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 335 cattgaagtcattggtaacatacaggagatgggggtggagaagagaccattgtgagcagt 276

                                                                       
Query: 245 ccactcatatgttgcttcactgacagtaataggaaaggtaggcaagaatttttgaaagca 304
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 275 ccactcatatgttgcttcactgacagcaataggaaaggtaggcaaggatttttgaaagca 216

                      
Query: 305 aaaagctccaa 315
           |||||||||||
Sbjct: 215 aaaagctccaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)