CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTCTGTTACTCCGNAATCTTCGTGGGTTCACTTGGCACAAGGCTAG
TTGCTGGTATTCAGCCTTCCCGCCTCCCAGCGTGGATTGATACAAAAGGA
CCTTAGCTTTGAATGGCTTCACGGTTTAGATCATTAACCCTTCGGATTTC
TTAGATGTCATAGTTCAGGTAAGCAAAGATTACCAAAATTAATTAACCCT
GAACTGGGGAAATCATAAGCTGTTACGGAAAAAAAAAAATCACAGATTTA
GAATCTCCAGACTGAATTTTTTGCATAGTAATTCCTTATTATTTGCCAAA
CACCTTTTATTTTTGTTAGACACCTCTTCCTCTCCTGTATTAACTTCAAT
CACTTATAATATTATCACCCACCCTCCTATATATGCCCCGTCGGTGCTTT
GTCTTCGTTTTTTACACAGCTGCACTGTCCTATACTTCTTCTCTCTCTAT
ATCACGTACATCCTCTTTACCTCTTAAGGCCTTTGCCTGTTGTCTTTAAT
AAATGTATCTCGTATATCTGTTTACGCTCCTTCTTTACCTTGTCTCTTTC
ATCAGTTTTTTTATTCTTCCTTTCTTTTACTTCTCCTTTTTTTTATATTG
CTTTTTTCTTTTTTCTTTTTTTCTACTTACATTTTCTCTCACATTCTCAT
TTTATTATTTCTACTTTTCCTCACTACCTACACTTTTTTTCTTCACTCCT
CT

NCCTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTAAATATAGAATT
GGTAATATTTAGAATATTAAATGATAATAGTTTGTATATATTTTATAAGA
ATATAATTTATTCTTAGTATCTATTTTACTTGTTTTTATTTTAATTTGCT
AAGCAAGCTACTTTAACTTTTTAAAATAATTTCTGTAGCACATATCAATG
CCTCTAAAAATGATTCAGAAATGCTTGAAAAATCTAGATTTCAGTAGTCC
ATAATTATAATTTTCTAAATTTTCATTTCTAATTTATGTATTAAAAATGA
AAATATTGTTATAACTATTCCTATAACTCAAACATTGATATTTGAGTTAA
TAAAATTAAACATGTCTATCACTTATGTACAAATACTTATGTATTATTAA
TATACAACTATATATGAGTTAAAGGATTTCTTAGAATGCTTTATATTGAT
GCACACCTAATCCTTTTTAATATATTTTGGTATTTTAATTATAGTATCTT
ATTGTTTCTTTTATTTATACATAACTTATAAAAATTTTATGGAATTTTTT
TCTGTTGTATATTAATTATATTTTGACAATTTTTCTGTAACTGCTGATAT
TAATCTGAATTTTGTGGGTATCAGATCATAAATAGCCACAATAAAGAAAC
ACCCTATTCTTAATTCTTG

Query= MSMg01no263_e11.g1 MSMg01no263_e11.g1 CHROMAT_FILE:
MSMg01no263_e11.g1 PHD_FILE: MSMg01no263_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:09 2005
         (578 letters)



>mm_chr1_112020932_112021909
          Length = 978

 Score = 1087 bits (562), Expect = 0.0
 Identities = 574/578 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattaaatatagaattggtaatatttagaatattaaatgataatagtttgtatatatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 aattaaatatagaattggtaatatttagaatattaaatgataatagtttgtatatatttt 843

                                                                       
Query: 61  ataagaatataatttattcttagtatctattttacttgtttttattttaatttgctaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ataagaatataatttattcttagtatctattttacttgtttttattttaatttgctaagc 783

                                                                       
Query: 121 aagctactttaactttttaaaataatttctgtagcacatatcaatgcctctaaaaatgat 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aagctacttgaactttttaaaataatttctgtagcacatatcaatgcctctaaaaatgat 723

                                                                       
Query: 181 tcagaaatgcttgaaaaatctagatttcagtagtccataattataattttctaaattttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tcagaaatgcttgaaaaatctagatttcagtagtccataattataattttctaaattttc 663

                                                                       
Query: 241 atttctaatttatgtattaaaaatgaaaatattgttataactattcctataactcaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atttctaatttatgtattaaaaatgaaaatattgttataactattcctataactcaaaca 603

                                                                       
Query: 301 ttgatatttgagttaataaaattaaacatgtctatcacttatgtacaaatacttatgtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttgatatttgagttaataaaattaaacatgtctatcacttatgtacaaatacttatgtat 543

                                                                       
Query: 361 tattaatatacaactatatatgagttaaaggatttcttagaatgctttatattgatgcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 542 tattaatatacaactatatatgagttaaaggatttcttagaatgcttaatattgatgcac 483

                                                                       
Query: 421 acctaatcctttttaatatattttggtattttaattatagtatcttattgtttcttttat 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 482 acctaatcctttttaatatattttgggattttaattatagtatcttattgtttcttttat 423

                                                                       
Query: 481 ttatacataacttataaaaattttatggaatttttttctgttgtatattaattatatttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttatacataacttataaaaattttatggaatttttttctgttgtatattaattatatttt 363

                                                 
Query: 541 gacaatttttctgtaactgctgatattaatctgaattt 578
           |||||||||||||| |||||||||||||||||||||||
Sbjct: 362 gacaatttttctgttactgctgatattaatctgaattt 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)