BAC Information

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BAC

Clone NameMSMg01-264D16
Chromosome1 (Build37)
Map Location 187,894,412 - 187,894,735
singlet/doubletsinglet
Overlap genenone
Upstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785
Downstream geneLyplal1, Tgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264D16.T7 (MSMg01no264_d16.b1)MSMg01-264D16.TJ (MSMg01no264_d16.g1)
ACCAG405834AG405835
length717762
length of high quality
(start - end)		329 (45 - 373)291 (78 - 368)
definitionCHROMAT_FILE: MSMg01no264_d16.b1 PHD_FILE: MSMg01no264_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:21 2005CHROMAT_FILE: MSMg01no264_d16.g1 PHD_FILE: MSMg01no264_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:21 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTACTTGGCTGCACAATGATGCTTGCACAAAAATAAACTATAACC
AAAAAATTAGGGTTGTATCCCTAGTTCTTATGAAAGAAAGTCTAATGGAC
AATCCAATGCTCACGTAATCCAGAGAGAAGTAATAATGCTGACATCACCC
CTGACTGCATGTCTAGTGTGTGATAGTCACTATGCAGGCACAACGAACTC
CAGTTCTTGCCCTCCAACACAATTTGGGGTGAATGCAAATTGATATGTCA
AAGATAAACACAGAACAAAAAAGAACTTGTCATTTCTGTTCAAAACAAGT
CGTTATCAATATCTGTGTCTGACATATATGAGTTTGTCACTTGAGGAGAT
GATGACATTCCAGTCAGAAGATATAATATGCTATAGGCAAAGCTGTAAAG
GGGTTTGACACTTCTCAGTAGGGAGAGAAAAGAAGGCTGGGGTCTGGGAG
GAGGAGGAGAGTTACTGTGTGCCTGTGTTGTGACAGGGGAGTCTGAAAAG
GACAAGGGTCAGATGGTGAAAGGTTTCCACCAAGAATATGAATGCTTTTC
CAAAGGCAGAACAGACTGGAAGTGTGCAAAACTTGTTAGGTAGTGGCATA
AGCCACTAGCTTCACTGGCATGCTATAGACCAAATAANAAGAAAGGAGGA
GAGAGCAGAGGCAAAGG

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGAGTGCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGTTTTTATATCCCCACCATGCCCCAACAGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGG
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATA
AGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATTAGATATTAATT
TGCTAAACCCATGAAACTCTAGGAGAAATGAAGACTGAAGTGTGGACACT
ATGCCCCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_d16.b1 MSMg01no264_d16.b1 CHROMAT_FILE:
MSMg01no264_d16.b1 PHD_FILE: MSMg01no264_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:21 2005
         (329 letters)



>mm_chr1_187894208_187894936
          Length = 729

 Score =  605 bits (313), Expect = e-177
 Identities = 322/325 (99%), Gaps = 2/325 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtacttggctgcacaatgatgcttgcacaaaaataaactataaccaaaaaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtacttggctgcacaatgatgcttgcacaaaaataaactataaccaaaaaatt 264

                                                                       
Query: 65  agggttgtatccctagttcttatgaaagaaagtctaatggacaatccaatgctcacgtaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agggttgtatccctagttcttatgaaagaaagtctaatggacaatccaatgctcacgtaa 324

                                                                       
Query: 125 tccagagagaagtaataatgctgacatcacccctgactgcatgtctagtgtgtgatagtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccagagagaagtaataatgctgacatcacccctgactgcatgtctagtgtgtgatagtc 384

                                                                       
Query: 185 actatgcaggcac-aacgaactccagttcttgccctccaacacaatttggggtgaatgca 243
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actatgcaggcactaa-gaactccagttcttgccctccaacacaatttggggtgaatgca 443

                                                                       
Query: 244 aattgatatgtcaaagataaacacagaacaaaaaagaacttgtcatttctgttcaaaaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattgatatgtcaaagataaacacagaacaaaaaagaacttgtcatttctgttcaaaaca 503

                                    
Query: 304 agtcgttatcaatatctgtgtctga 328
           ||||||||||||||||| |||||||
Sbjct: 504 agtcgttatcaatatctatgtctga 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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