BAC Information

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BAC

Clone NameMSMg01-264E13
Chromosome1 (Build37)
Map Location 179,738,817 - 179,739,143
singlet/doubletsinglet
Overlap genenone
Upstream geneSdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss
Downstream geneEG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264E13.T7 (MSMg01no264_e13.b1)MSMg01-264E13.TJ (MSMg01no264_e13.g1)
ACCAG405873AG405874
length716770
length of high quality
(start - end)
---292 (60 - 351)
definitionCHROMAT_FILE: MSMg01no264_e13.b1 PHD_FILE: MSMg01no264_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:25 2005CHROMAT_FILE: MSMg01no264_e13.g1 PHD_FILE: MSMg01no264_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:25 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATAGGNGGAATTNTTTGT
TTTTCCCAGAGAAAGATTTTTTAATGGGGTTATTTGATTTTNTGAAGTNN
ACCTTTTTGACCCCTTTATATATGNNGGATATTAGTNNNNTATNTGATTT
AGGATAGGTAAAGATNNTTTNNNAATNTGTTGGTGGTNTTTTTGTNTTAT
TGANGGTGTNTTTTGGNTTGNAGAANATTTGGAGTTTTATTATGTNNNAT
TTGTNAATTNTNGATNTTANAGNANATGGNATTGGTGTTNTGTTNAGGAA
TTTTTTTTTTTTTTNNANANNNNNAAGGNTTTTNNNNANNNNNNNTTTTA
TTAGNTTCCCCCCCCCCCCCCCCCATGTGTTGTTATTTGATANANTTANA
TTTGANNNAAAAAAANGGAATTTTGTATGGNGGGGGGGGGGGGGTTNTAN
NNGATAANNANNAGTTGTGTNNGTANNAATTGTTGAAAATGATGTNTTTT
TTGAAGTGGATGGTTTTAGTTNNTTTGGTGAAGATAAAGTGTATATAGGT
GTGTGGGTTTATTTNGGGAGATGGGATTGGATTGAATTGGTTTAGTTGTT
TGTTGGGTTATGGAGAGGATGGAGAATAGATTTTTTTTTTTTTTTTTTTA
AGGGGTTGGGAGGGAGGGGTATATGGGGGGATTTTTTTTTGGGTTGAAAG
TTTTGTGTTTTTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATCTGGGAAGGGAAAGCTGGGCTTCAAAACCCAGCAGCAAA
CGGAAAACCCAAAGATTAGTGTATGGTGGGATATGCTCAAAACAAATACA
TTACTTTCATACATATATATATTCATTCATATATATATATATATCCATCT
GTCTGCTGCTCCACACCCCACCCCCTTCTAATTTTCTTTTAAATGATCTA
AGGCAGCAGCAAGAAGGTGCCACTGCCCTTCTGCAGAACAGGTTTTCAGA
GGGCTGACTCATCTCTAAAGACTCCAGAGGGAACTCAGGCCATCTGCTGT
TTTATTGGCGACCAACCCCCCTGGTTCTTAAAATACAATATGCGGAGAAA
AACCACCCCAAAATAAAAAAAAAAAAATAAAGAAAAAAAAATTTTAAGTT
GTTGTAACATCTAATTTGATGTAAGATTATTATAATATTAGATTATTAAA
TATATTTGTTATAGTATATGTTAGGAGACGTACTGCATATAGGTGGGACA
ATAATTACAACAAACACGAAGAACGGCGACGCTATTATAGACGATTTAGA
TACTGTTTCTATAGCTATGTAAGTGATGACATTATAGTTGTTATACGTCT
AACTAATAATATGGTAGAATGGAATGGAATCAAGAGCTCAAGGAAAATTA
CGCATTATATATAGCCTACTCGCGTGGTAAGGCAAACCAGGTGATCCACC
TGTGAAGATGTTCTATACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_e13.g1 MSMg01no264_e13.g1 CHROMAT_FILE:
MSMg01no264_e13.g1 PHD_FILE: MSMg01no264_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:25 2005
         (292 letters)



>mm_chr1_179738452_179739143
          Length = 692

 Score =  304 bits (157), Expect = 5e-87
 Identities = 262/335 (78%), Gaps = 66/335 (19%)
 Strand = Plus / Minus

                                                                       
Query: 14  aagctgggcttcaaaacccagcagcaaacggaaaacccaaagattagtgtatggtgggat 73
           |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 692 aagctgggcttcaaaacccagcagcaaacggaaaagaaaaagattagtgtatggtgggat 633

                                                                       
Query: 74  atgctcaaaacaaatacattacttt--------------------------------cat 101
           |||||||||||||||||||||||||                                |||
Sbjct: 632 atgctcaaaacaaatacattactttcattcatatatacatacatacatacatacatacat 573

                                                                       
Query: 102 acatatatatat---------------tcat-tcatatatatatatat-------atcca 138
           ||||||||||||               | || | ||||||||||||||       |||||
Sbjct: 572 acatatatatatatatatatatatatat-atat-atatatatatatatagttatcatcca 515

                                                                       
Query: 139 tctgtctgctgctccacaccccacccc---cttctaattttcttttaaatgatctaaggc 195
           ||||||||||  ||    |||| ||||   |||||||||||||||||||| |||||||||
Sbjct: 514 tctgtctgct--tc----cccctcccccttcttctaattttcttttaaataatctaaggc 461

                                                                       
Query: 196 agcagcaagaaggtgccactgcccttctgcagaacaggttttcagagggctgactcatct 255
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agcagcaagaagatgccactgcccttctgcagaacaggttttcagagggctgactcatct 401

                                              
Query: 256 ctaaagactccagagggaactcaggccatctgctg 290
           |||||||||||||||||||||||||||||| ||||
Sbjct: 400 ctaaagactccagagggaactcaggccatccgctg 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)