BAC Information

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BAC

Clone NameMSMg01-264F02
Chromosome1 (Build37)
Map Location 151,880,881 - 151,881,168
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042813, Pla2g4a
Downstream genePtgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264F02.T7 (MSMg01no264_f02.b1)MSMg01-264F02.TJ (MSMg01no264_f02.g1)
ACCAG405898AG405899
length724768
length of high quality
(start - end)
313 (45 - 357)290 (78 - 367)
definitionCHROMAT_FILE: MSMg01no264_f02.b1 PHD_FILE: MSMg01no264_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:27 2005CHROMAT_FILE: MSMg01no264_f02.g1 PHD_FILE: MSMg01no264_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCAACTTGCTTCTAATATGCAATGTAGCCTGTACTGAAGATTTCT
ATCTCAGTGGGATTCCCTGGCTATTCATGGTATTCCGTTGTTTGAGTGAG
ATTGGCTACTGTCCTTAGCCAAAACACTTTGCAGACCAGCCATGAGCTGT
TGGCTCCGTCTTTTGTAATGCTTAATTAGTTTCACTGTCTTTATTAAGCT
CCGCAGTTTCAAGCATTTTCTAGGACATTGGAACACCAGCAAAGACTCTG
GCTATGTCAGAATTCAATCTTAAAAGACACTTATAATAAAATAATACTAA
GAGAGAGCATGTGTATCCGCCACACCACCACTAACGAGGGAATAGGGTGT
GAGCATATGGGTTATAAGAGTGCCAAAGCTCCAGGAGGTGAGTTCCCTTT
GAAACTCTATGCCTCTTGAGTGCTCCCAGGCTTCTCAGCCTGTCAAGCAG
ACTTCACTGGAGTGTGTGTGGCATATCATATACTCCCTTGGAACTTCAGA
GTTCTCAGACTGTCCAGCGACAAAAGACAGGTGACTCCACAATTTGATCT
TGCTGACCTTGGGATCAGAGCCATCAAAATCTGAGCAATCCTCAGTTAAT
GAGATTTGTTTCCAACCACCAAAACCAGGACTCTCTCTCACTGTGTACAG
CCCAGCCTGTTCTACCCTCCTACG
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATCAGCTGGCAATTTAATACTA
ACCACTACAGGAACCCTCTCAAAAACTCAAAGGAAGAAAGGGATGGACTA
AGGACAAGCAATGAGTAAAACAGAACAACAATAAAACCCAGTCACTATTT
CAACCTTACTGGCTCATGAGGCCCACCCACTGAGCATGATAAACACATGG
CTGATTGGGCATGCTGAAGGATGATAGGAGTGTTATAAATGCTAGAAACA
ACATAGCTGGAGCCAGGAGAAACTGTGTACACTGCAATTCCAGAATTCAG
AAGGGCAAGGCAAGAATATTTCAAGCTCCCGCCACCCACTAAGTTAAGAG
TGAGTATCTAAGATTTGTAGTGAGAAATTTGGTTTCTTTAAAACAAACAC
ACACGCGGAAAAGTTATATGAATATGTTATTGGTTTAATCCCAGATGTGG
GCTATGGGGCTGCTTTAGGTTGCCACAGCAACTGACTATGATTTACCTCA
TGCTCTAGCAGGTACATGATTTTTCCAGCTACCGTTAGTTTCTGAAGAAT
TGTGACATTTGGAAGTCTAGAGGGCTTATTATTATCATTAATAATTATCA
CTTATTGATTCTATTTCATTAACCCCCTCAAAGAACATCCCCCTTTCCAA
GTGGGTTCCATCCACAAATAACTACATCCACAATGGTGGAAAAACTTGCG
TCTCCAATTAACAGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_f02.g1 MSMg01no264_f02.g1 CHROMAT_FILE:
MSMg01no264_f02.g1 PHD_FILE: MSMg01no264_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:27 2005
         (290 letters)



>mm_chr1_151880681_151881369
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%), Gaps = 1/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatcagctggcaatttaatactaaccactacaggaaccctctcaaaaactcaaaggaaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 201 tatcagctggcaatttaatactaaccactacaggaaccctctcaaaaaat-aaaggaaga 259

                                                                       
Query: 61  aagggatggactaaggacaagcaatgagtaaaacagaacaacaataaaacccagtcacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aagggatggactaaggacaagcaatgagtaaaacagaacaacaataaaacccagtcacta 319

                                                                       
Query: 121 tttcaaccttactggctcatgaggcccacccactgagcatgataaacacatggctgattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttcaaccttactggctcatgaggcccacccactgagcatgataaacacatggctgattg 379

                                                                       
Query: 181 ggcatgctgaaggatgataggagtgttataaatgctagaaacaacatagctggagccagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggcatgctgaaggatgataggagtgttataaatgctagaaacaacatagctggagccagg 439

                                                            
Query: 241 agaaactgtgtacactgcaattccagaattcagaagggcaaggcaagaa 289
           ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 440 agaaactgtgtacactgcaattccagaattcagaacggcaaggcaagaa 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space:   191080
Effective search space used:   191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)