TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTATTCCTGAAGCACGCTGCCTTTCCACTTTTGTGTGATCTG
TGTACAGCACTCCAGGTAACACGAGTTGACATTTATTGTTAAACTTGCCT
CTTGAATCACTCTGAGGGAGACCATAAATGTCTCAGATGTGATTCCACAC
AGAGCCTAAGATGGCAATATTATCTATGTGTGCAATTATGATTCTCTCTT
CCTTTCAAAGAACGTAAGTGCGGGAAAGAGACTGCTACCTTCTTTGGTAA
AGTGGGATGACCAGTATTTTTGTGTGAGTACTGTAGGGTCATGAAAGCAT
TATCTCAGTAGNNGTTCCATNACAAANTCTCCCCTAGACCAAGAGTTGAA
ATAACCTGGCCACATTCCAAAAAAAAAATCTGGTATCTCGTCTGGGACAG
TTGGTTGTACTCAGGTTATTTTTATCCCCAGTTCTGGGGACTAGACCCTG
AGCTTTGCCTCTGTGAGGCATTCCACCACTGACTAGATCCTCAATACCTA
TACTCCAGCTCTAATGCTACATTTAATCTTCTGCATACCATACTTGACAT
AATTTAAGTTCATATGCTATAGGAAAGGCACAAAATTGCTTTTATAAATA
GTTCTTATCTCTTCAAATAGTGCCATTTAATATATACATGGAAGGAGATT
TGCAGATA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTGTCTGCAAATAGCCCGCTCTGCC
AGCTGACAGCAGCTTTCATCTTGCCTCCTTCAGTCACCTTTTTCTAAAAA
TCCCTTTGCAGCAACGCTAATAGCAATAGCTTGGCCATCTTGCCTGTAGT
TGGAGTATGTGCAAGTAGAGGTGACTTGAACTACAGAATAAATGACCTAT
CCATAGGACCACACTTTAAAAACAGATGTAGTTTTCCATTTCCCACTTCA
CAGTATAGATTTGGGACATGGGCTGATTTCTAGGATGAGTGTTTGACAGG
AAGGGGAGAAATTTTTCTTTGACCCCACCACCCCAATGCTTCTTTCCTGT
GTGTCAGGTTGAAGAATTTCTGTACTGATAAATAATGACGCTCTGTGTAA
GGGAAAACAGAGAACGAGCTGCCGAACAAACCATGAGGAATGGTCTAGCA
AAGAGGCCAGTTACTGAGGCTGCTTCCAGAGGCTCGTGATGATCGCTACT
GAAGTGTGAGCATGTTGTATTTCTTATGCTCCTGTTTTAGAATCTGTCTT
TAAAGCATATTTCCCTGAGCTGGGAACTCCCCTTCGTTTAACAGTATTTT
AAACAACTTTCCTACAATGGTTGTCTTAGTTAGGGTTTTACTGCTGTGAA
CAGACACCATGACCAAGTCAGTCTTGTAAATGACATTTAATTGGGGCTGG
CTT

Query= MSMg01no264_f23.b1 MSMg01no264_f23.b1 CHROMAT_FILE:
MSMg01no264_f23.b1 PHD_FILE: MSMg01no264_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:31 2005
         (277 letters)



>mm_chr1_195456079_195456755
          Length = 677

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtatctcgtctgggacagttggttgtactcaggttatttttatccccagttctggggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtatctcgtctgggacagttggttgtactcaggttatttttatccccagttctggggac 260

                                                                       
Query: 61  tagaccctgagctttgcctctgtgaggcattccaccactgactagatcctcaatacctat 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tagaccctgagctttgcctctgtgaggcattctaccactgactagatcctcaatacctat 320

                                                                       
Query: 121 actccagctctaatgctacatttaatcttctgcataccatacttgacataatttaagttc 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 actccagctctaatgctacatttaatcttctacataccatacttgacataatttaagttc 380

                                                                       
Query: 181 atatgctataggaaaggcacaaaattgcttttataaatagttcttatctcttcaaatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgctataggaaaggcacaaaattgcttttataaatagttcttatctcttcaaatagt 440

                                                
Query: 241 gccatttaatatatacatggaaggagatttgcagata 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccatttaatatatacatggaaggagatttgcagata 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no264_f23.g1 MSMg01no264_f23.g1 CHROMAT_FILE:
MSMg01no264_f23.g1 PHD_FILE: MSMg01no264_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:31 2005
         (237 letters)



>mm_chr1_195620396_195621032
          Length = 637

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttcagtcacctttttctaaaaatccctttgcagcaacgctaatagcaatagcttggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ccttcagtcacctttttctaaaaatccctttgcagcaacgctaatagcaatagcttggcc 376

                                                                       
Query: 61  atcttgcctgtagttggagtatgtgcaagtagaggtgacttgaactacagaataaatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atcttgcctgtagttggagtatgtgcaagtagaggtgacttgaactacagaataaatgac 316

                                                                       
Query: 121 ctatccataggaccacactttaaaaacagatgtagttttccatttcccacttcacagtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctatccataggaccacactttaaaaacagatgtagttttccatttcccacttcacagtat 256

                                                                  
Query: 181 agatttgggacatgggctgatttctaggatgagtgtttgacaggaaggggagaaa 235
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agatttgggatatgggctgatttctaggatgagtgtttgacaggaaggggagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)