BAC Information

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BAC

Clone NameMSMg01-264H01
Chromosome1 (Build37)
Map Location 117,145,868 - 117,146,177
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227506
Downstream geneCntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264H01.T7 (MSMg01no264_h01.b1)MSMg01-264H01.TJ (MSMg01no264_h01.g1)
ACCAG405987AG405988
length728780
length of high quality
(start - end)
314 (45 - 358)178 (132 - 309)
definitionCHROMAT_FILE: MSMg01no264_h01.b1 PHD_FILE: MSMg01no264_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:37 2005CHROMAT_FILE: MSMg01no264_h01.g1 PHD_FILE: MSMg01no264_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTACAACTGCCTTGTAGTAGTGGCCTCCCTTTACTTTCCAGCCAC
AAATGTGCGATGATTTAGAACCATCACTGGAAATCCCCTTTTCTGGCAAA
AGCAGTGCAGTGAAATACTCATGCAACCCTATGGATGCTTGGGTTTGCGT
TATCAGTAGACAATTATACTGAAAACCTTTCCAGAGCCACTCTCTAATTT
CATTTAGGAAAAGAGAAAAAAAGAAATGCAAGAATAGCTGGGTTTTTAAA
TTTTATTTTTATTTTTTACTTATTTATTTATTTGTTTTGTTTTGTTTTGT
TTTGTGGAGTATCTCACTTTTTCTCCCACCCTTCATATTTAAATTTATTA
AAATATATATTAAATGACAGTTCTGCTTCACAAACTCACTAACCCTAATT
TTTTTATTATACGAGCCTTAAATCCCTGTTTAGTCTAAACTGAGGTGCTT
GTAAGATTAGGATAACTTTTTTTTTTCCATTTTTTATTAGGTATTTAACT
CATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCATCCC
CACTCCCCTGCCCACCCACTCCTCCTTTTTGGCCCTGGGGTTCCCCTGTA
CTGCGGGATATAAAGTTTGCAAGTCCAATGTGCCCCTCTTTCCAGAGATG
GCCCACTAATCCCTCCTTCAAATAAACG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCTAAAAATTCTCACCTGAGGAATACCGAATGGC
AGAGAAGCACTTGAAAAAATGTTCACCCTCCTTAATCATCATGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGA
AATCAGACTGGCGGTTCCTCATTTTTTTGTACATAGTACTACCGGAGGAT
CCAGCAATACCTCTTTTTGTTTTATACCCCCAACATGCCCCAATAGGTAA
GAAGGACACATGCTCCTCCATGTTCATAGAAGCCTAATTTATAATAGCCA
GAAGCTAGAAAGAACCTATATGCCCCTCATCAGAGTAATGGATACAGAAA
ATGTGGTACATCTACTCAATGGAGTACTACTTCACCTATTATTAAGAATG
AATTTATGAAATTTCCTATCCTATGGATGGACCTGGAGGGTTTCATCCAG
AGTGAGGTAACATTTCCCAATAGTAACTCACACAATATGTATTCACTGAT
AAGCGGTATTTTATCCCCAAGTCTAGGATTACCTAGGAATTAAAAAATAT
TTTTTGCTAAACCCCTGGAAACTCCTCTAATAAATGAAATACTGAATTGG
TGGGAAACTTATGCCCCCTCTCTTTAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_h01.b1 MSMg01no264_h01.b1 CHROMAT_FILE:
MSMg01no264_h01.b1 PHD_FILE: MSMg01no264_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:37 2005
         (314 letters)



>mm_chr1_117145664_117146377
          Length = 714

 Score =  545 bits (282), Expect = e-159
 Identities = 303/310 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtacaactgccttgtagtagtggcctccctttactttccagccacaaatgtgc 64
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattcagtacaactgccttgtagtagtggcctccttttactttccagccacaaatgtgc 264

                                                                       
Query: 65  gatgatttagaaccatcactggaaatccccttttctggcaaaagcagtgcagtgaaatac 124
            |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgatttagaaaaatcactggaaatccccttttctggcaaaagcagtgcagtgaaatac 324

                                                                       
Query: 125 tcatgcaaccctatggatgcttgggtttgcgttatcagtagacaattatactgaaaacct 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 tcatgcaaccctatggatgcttgggtttgcgttatcaatagacaattatactgaaaacct 384

                                                                       
Query: 185 ttccagagccactctctaatttcatttaggaaaagagaaaaaaagaaatgcaagaatagc 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 ttccagagccactctctaatttcatttagaaaaagagaaaaaaagaaatgcaagaatagc 444

                                                                       
Query: 245 tgggtttttaaattttatttttattttttacttatttatttatttgttttgttttgtttt 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggttttttaattttatttttattttttacttatttatttatttgttttgttttgtttt 504

                     
Query: 305 gttttgtgga 314
           ||||||||||
Sbjct: 505 gttttgtgga 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)