BAC Information

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BAC

Clone NameMSMg01-264J08
Chromosome1 (Build37)
Map Location 21,813,006 - 21,813,283
singlet/doubletsinglet
Overlap geneKcnq5
Upstream genePaqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, D1Mgi28
Downstream geneLOC435612, LOC100040338, Rims1, Rims1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264J08.T7 (MSMg01no264_j08.b1)MSMg01-264J08.TJ (MSMg01no264_j08.g1)
ACCAG406090AG406091
length730942
length of high quality
(start - end)
111 (45 - 155)278 (127 - 404)
definitionCHROMAT_FILE: MSMg01no264_j08.b1 PHD_FILE: MSMg01no264_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:48 2005CHROMAT_FILE: MSMg01no264_j08.g1 PHD_FILE: MSMg01no264_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATAAAGCTGATCCATAAGATAGACTTAATGCCTGGTACTTTTTTT
TTGGGGGGGGGGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAG
TCCCCCCCCACGCTTCCCCACTCACTCCCCCACCCACCCACTCTCACTTC
TTGGACCTGTCTTATCTCCTGTACTGAAGCATATAAAGTTCGAACGACCA
ATGTACCTCTCCACTGATGGCCGACTACGCCATCTTCTGATACATATGCA
ACTAGAGACACGACCTCTGTTTTATACAGGCTAGCTCATAATGTTGTACC
ACCTCTATTTTTTTTTATCCCTTTACTGTTCCCCGATTATCTATAGNTCC
TCCATTGGGGGCCCTGTGTACCAAAAAAAAACAAATTGCGAGCATCCGCT
TCTGTGTTTGCTACGCCCCTGCATAATCTCACAAGAGACAGCTATATCTG
GATCCTTTCAGCACAAACTTGCTAGCGTATGCAATGCTGTCAGCGTTTGG
AAGCTGATTATGTCATGTATCCTCAGATATGTCACTCACTAGAAGGTCCA
TTCTTACGTCACAGCTCCCAAATTTGTCTCAGAAACTCCTTCCATGGTTG
TCTTGGAACCCAACTCTAAAAAAGAACCGCTGGCAATTTTAATTGTACTA
AAAACCCATGCCTGGCTAAGCCCAACATTC
CCTCCCTCTCGCTCTTTCCTTTTCTCTCTATAACTCANAATTCTTTTTTT
TCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTACTTTCAAACAATGAAGGGGAA
AAAATAAGAGTGTAAAGAGTGAGGAAACGGATTTAGAACTTTATCCAAAA
GAGATATAGTGTTTGTCTTAAATTATTAATGGTATTAAATATCTTTCCTT
TTATGTGTTTCCATGAACCCATTTTTATATAGGTAGCACTAATTGAACTT
GTTTAAATAAAGAAATGAATAAGGAGTGGATGAGGTTGAGAGGGAGATGT
GATCAAGCATGCTGGGGGGAACTGGAATGAGTGAATAAGGGATGAATATG
ACCAAGGTACATCACAGGTTTGTTTGAACCCCTCCCCACGACTAAATAGA
TAGATAGATAGTTAGATAGATAGATAGATAGATAGATAGTATAGATAGAT
TAGTTTGTATCCCTAGATCTTCCATCATTCTCAATAAACAATAAAATAGC
ATTTTAATTATTTTATCATTACTTTACTACAATTCCCCATTACTGTCCTA
CCTTTCCTATAAAAATATCCAACCTTCTACATATCCCTCTTTCATCTCCT
TTAACATGTCATATAACACATTTATTCCTCCATATATTTATCTTTTTAAT
TCTTTTACCTCTCCATTTCTCTCTTATATATCACACTCCTAATATTAACT
ATTACTTTTTACTTATTAAATTTTCTCAAAATTACTACATCTCTTATTCT
CATATTGATTACCATTCATTACTATTAATTTTACTTATTCTCTTCTTGAT
CTTCATAGTATGCCAACATAATTCGCTAACTCTCTCCATATTTCCTTGAC
TCATTATAATTAATACACCCTCCTACGTATATCATGATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_j08.g1 MSMg01no264_j08.g1 CHROMAT_FILE:
MSMg01no264_j08.g1 PHD_FILE: MSMg01no264_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:48 2005
         (278 letters)



>mm_chr1_21812944_21813621
          Length = 678

 Score =  499 bits (258), Expect = e-146
 Identities = 273/278 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttactttcaaacaatgaaggggaaaaaataagagtgtaaagagtgaggaaacggatttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 340 ttactttcaaacaatgaaggggaaaaaataagagtgtaaagagtgaggaaatggatttag 281

                                                                       
Query: 61  aactttatccaaaagagatatagtgtttgtcttaaattattaatggtattaaatatcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aactttatccaaaagagatatagtgtttgtcttaaattattaatggtattaaatatcttt 221

                                                                       
Query: 121 ccttttatgtgtttccatgaacccatttttatataggtagcactaattgaacttgtttaa 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 220 ccttttatgtgtttccatgaacccatttttatataggtagcacgaattgaacttgtttaa 161

                                                                       
Query: 181 ataaagaaatgaataaggagtggatgaggttgagagggagatgtgatcaagcatgctggg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 160 ataaagaaatgaataaggagtggatgaggttgagagggagatgtgatcaagcatcctggg 101

                                                 
Query: 241 gggaactggaatgagtgaataagggatgaatatgacca 278
           ||||||||||| |||||| |||||||||||||||||||
Sbjct: 100 gggaactggaaggagtgagtaagggatgaatatgacca 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)