Query= MSMg01no264_o09.b1 MSMg01no264_o09.b1 CHROMAT_FILE:
MSMg01no264_o09.b1 PHD_FILE: MSMg01no264_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:12 2005
(237 letters)
>mm_chr1_73048050_73048684
Length = 635
Score = 412 bits (213), Expect = e-120
Identities = 229/235 (97%), Gaps = 2/235 (0%)
Strand = Plus / Plus
Query: 1 catcctttcagtcacacccgattgtgctggggttgacaagcgagcacgagtacccactgc 60
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 catcccttcagtcacacccgattgtgctggggttgacaagcgagcaagagtacccactgc 260
Query: 61 agagtaacttgcgttgctctggccttgcctgaagaatttgatgacagagttaggatttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagtaacttgcgttgctctggccttgcctgaagaatttgatgacagagttaggatttag 320
Query: 121 atcccagtctttgctttcctgagcaagtgtctcttagtcttggaggtttggtttcctggc 180
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 atcccagtct--gctttcctgagcaagggtctcttagtcttggaggtttggtttcctggc 378
Query: 181 cttgttgatctgtgctgtcttatcccaggtgactttggttgtcagttatgtaggg 235
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttgttgatttgtgctgtcttatcccaggtgactttggttgtcagttatgtaggg 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 635
Length adjustment: 9
Effective length of query: 228
Effective length of database: 626
Effective search space: 142728
Effective search space used: 142728
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no264_o09.g1 MSMg01no264_o09.g1 CHROMAT_FILE:
MSMg01no264_o09.g1 PHD_FILE: MSMg01no264_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:12 2005
(284 letters)
>mm_chr1_73208616_73209300
Length = 685
Score = 447 bits (231), Expect = e-130
Identities = 271/287 (94%), Gaps = 7/287 (2%)
Strand = Plus / Minus
Query: 1 agggcttggaatgacagcactcactcggccacactgggct--gtttccc--catcaggaa 56
|||||||||||||||||||||||||||||||||||||||| | | | |||||||||
Sbjct: 484 agggcttggaatgacagcactcactcggccacactgggctggg---cacagcatcaggaa 428
Query: 57 gggtactgtctgctttgtcagcgcagcttgcaccctttcctcctcagcctctctgaccta 116
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 427 gggtactgtctgctttgtcagcacagcttgcaccctttcctcctcagcctctctgaccta 368
Query: 117 gattattttcccaggaagatagtttcaaaggcttctttttaaagtcaggctggagccttt 176
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gattattttcccaggaggatagtttcaaaggcttctttttaaagtcaggctggagccttt 308
Query: 177 agctttccataggcttattcagttgctatgtgctgagtatcaagacaatatcgtgccaag 236
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 307 agctttccataggcttattcagttgctatgtgctgagtaccaagacaatattgtgccaag 248
Query: 237 actgcctatttctgtgagaagtgactccccatagactccttcttggt 283
|||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 247 actgccaagagctgtgagaagtgactccccatagactccttcttggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 685
Length adjustment: 9
Effective length of query: 275
Effective length of database: 676
Effective search space: 185900
Effective search space used: 185900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
