BAC Information

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BAC

Clone NameMSMg01-264P15
Chromosome1 (Build37)
Map Location 41,965,956 - 41,966,243
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3, Mrps9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264P15.T7 (MSMg01no264_p15.b1)MSMg01-264P15.TJ (MSMg01no264_p15.g1)
ACCAG406369AG406370
length736787
length of high quality
(start - end)
270 (46 - 315)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no264_p15.b1 PHD_FILE: MSMg01no264_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:19 2005CHROMAT_FILE: MSMg01no264_p15.g1 PHD_FILE: MSMg01no264_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTAAAAATGTTGCTATTCACTGACATTCAGAATAGCCTCTGGTA
CTACACTATTACTTTGAGTAAAAGCTAGATCACTGCCCTTCACAGGAATC
TACCATCACCAAGGAAGAAGGAAGTTTCTGACCGAAGGAGAAACCAGAAT
AGATACTTAGAACTATAGCTGAGTTACACCCATATACAGGAATTTACAAT
GGTTTAGGAAGTAGATCGGGCTGTGGTTTTAGAGTATTGCATTATTCATG
GGATGGTTAGCTAGAATGTGTTCTCCCTAGTTAGAACCATGACTTGGGTC
TGAAAGTTCNTTTANNAGCACCGAACGATNCCACACCTGGTTTCCAAGAC
TATAGCTGACCTTAGATAGGGCTGAAAAAAACACAGTTATTTTTATTGCC
CAGTTCCTTCCGATCTTTGCGTTTTCATTCCTCTGTTCTGTGTAAAAGTC
ATTAAGCATCGGGTTACCTCATTTGTACCTTGCGGGTATGTCACCCAACT
CCATTATTGTCTTCTGTATAAAAAGTCTGATGCTCGATTTGACAAAATAC
ATTCAGATTCTACACAACCTCTCCTGTGTGCTTCTGTCTGTCAATTCACC
CGATGCTTTGCCCATCCACGACTAGAGACCCGGTCCACGCAGACAAAGGG
GACCAGAGGGTGTGCAGCACTTGTGTGTATGTTAAN
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTCCCTTAATATTTTGTTCTA
AATCTTTTCTTTGATTGCTTGAAACCGTTGCCAAGCCTCCTTACAAAGCA
TAAATAGAGAAATAGCATAAATAACCAATGGTGCCTGTAATCTAGGTACA
CAGGAGTTTAAGACAGGAGGATTACCTTAACTGTCTGTCCAGTCTAGGCT
AAATAGAGGTCTTTAGGTCAGCCTATATCTATGAAAACAAAATTTTTGAT
ATGTAATTCTCCAATTAAAATATTTTTTGGCAACAATAAGTAAGACTTCT
ACTCTGAATGACTATTGTTTTTAACCCCCCCTCCCCCTTATGTGATTATA
TTTCAGACATAACTTCTCCCCCCTTTGTGTGACTATATTTTAGACATAAG
TGTAGCAATCATGTTCAAAAGTAGAATCAGGTATCTACACACCCCTGCTA
AGGAATGTATAGAGAGCATATATATCTGAGTGTATGTTAAATTGCTAAAT
AATTTATGATGTTCATTTGAAGTTCAATATTTGTGTTAGAACACAATGAA
GACCATTGATTTATCCTATCTGACCTAAGAAGTTATCTCATTTTATAACT
TTAAATCCCATTTCTTAAGAAATCCAAATAACAATTCTAAGTTCATATTT
TACTTCCCTAATATTTATTGATTATGAAATTTCAGTCTCACCTTGAATCC
TCTAAATTGATTATAATTTTGTTCTTCCAAATATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_p15.g1 MSMg01no264_p15.g1 CHROMAT_FILE:
MSMg01no264_p15.g1 PHD_FILE: MSMg01no264_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:19 2005
         (288 letters)



>mm_chr1_41965756_41966443
          Length = 688

 Score =  511 bits (264), Expect = e-149
 Identities = 282/292 (96%), Gaps = 8/292 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctcccttaatattttgttctaaatcttttctttgattgcttgaaaccgttgccaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 tccctcccttaatattttgttctaaatcttttctttgattgcttgaaaatgttgccaagc 260

                                                                       
Query: 61  ctccttacaaagcataaatagagaaatagcataaataaccaatggtgcctgtaatctagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccttacaaagcataaatagagaaatagcataaataaccaatggtgcctgtaatctagg 320

                                                                       
Query: 121 tacacaggagtttaagacaggaggattaccttaactgtctgtccagtctaggctaaatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacacaggagtttaagacaggaggattaccttaactgtctgtccagtctaggctaaatag 380

                                                                       
Query: 181 aggtctttaggtcagcctatatctatgaaaacaaaatttttgatatgtaattctccaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtctttaggtcagcctatatctatgaaaacaaaatttttgatatgtaattctccaatt 440

                                                               
Query: 241 aaaatat----tttttggcaacaataagtaagacttctactctgaatgacta 288
           |||||||    |    ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaatatcaact----ggcaacaataagtaagacttctactctgaatgacta 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)