BAC Information

Click to search

BAC

Clone NameMSMg01-265B23
Chromosome1 (Build37)
Map Location 46,428,997 - 46,429,311
singlet/doubletsinglet
Overlap geneDnahc7b
Upstream geneCol5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225
Downstream geneLOC666855, Slc39a10, EG227061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265B23.T7 (MSMg01no265_b23.b1)MSMg01-265B23.TJ (MSMg01no265_b23.g1)
ACCAG406477AG406478
length755749
length of high quality
(start - end)
320 (45 - 364)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no265_b23.b1 PHD_FILE: MSMg01no265_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:31 2005CHROMAT_FILE: MSMg01no265_b23.g1 PHD_FILE: MSMg01no265_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:31 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTTATCAGGATACAAAAACATTGTAGAATGCAGACCTGGGACAGC
AGCAAGTCAAGAGAAACTGCCCACCTGCCACCCAGTTTCATAGCTTTGGG
AGGGGCTCACTTCCAGCAAATGTCCTGTACATACACTGTGAAGTTACCCA
GTACTTCCAAGTGTACAGCCTAAGAGGTAAGGCCTGCCTGAATTCAGTCC
ATATAGGTTGGCTTCACCCCTCCAGCAGATCTCTAAGGTACTATAGTCAG
TAGTCACCCTAAGAAGAGGCCTGACTGACTGGATTGTTCTAAGGGTCAGA
CACCTTCACACTTNCTCATCTTACCCTCCCCCCCTGTTCTCTACCATCCT
GGGCTTAGNCAAAGAGCAGGTGCCTTCAAAAAAAGAAGAAGATTACTACT
ACTGGTGATGAACGGTGCAATGTAGAGGGAGCCAAAGGTGCCCTCCACAA
GAACCTGGGTATAAATGAGCCTGCCTGTGATAGGATCCCTGGTGTCACAT
GATTCCTCAAAGCAAGGGTAAGAAATATTCCACCGCCTCCAGCCTATATT
GTGTCTGCCAACACCCCCCCCCCCCGGCTGTAGCCCTGCCCCAGAAGCAT
TGTCCTGGCAAGTCTCAACAAACAAGTCAGAGCTACAATGGCAGTTCAAA
TGAAATGGAGAGAATAATGTACCTACAGCAGCCCTCAGTGTACATAGCCA
AGAGA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTAATTTTAAACTTTCCTAGG
CTGGGAATGTAACACAACATGTAGAGTACTTTGGTAGCTTGCACTGAGCC
CTGGGTTTGATTACAGCAAAATCTGTGTAGTAGCAAAAGCCTGCGAGGCC
AGTTGTCAAGAGATAGAGAGAGCTACCAGAAATTCAAGGTCATTCTTTGA
TAAATATTGAGTTCAAGGCCAGCCTTGAATACATAAGACCTTGCTTCAAA
ACAGAAAAAAGAAAAACATAAAAGATTTATAAGAAAAAAAACTTTTCTTA
AAACATGTCATATTTGTCNNTTAATATGCCNNNTCANATCGGCCATATTT
GTATGACAATGAACATCTTAACGTTTATTTAAAAAAAAGAACAGCCCCTT
TTGGGATACTTTTTAAGTCGTCTGGCTTTAATAATAGAAAACACAAATGA
AAGTAAATTAAATTTAATCCTAATAACATCTAGTATATTAATGCTTCTTT
TCTTTAAGAACTCTCTTTACAGACGACTTATTTATGCTTCTCTGTGAGGA
ACTCCCTTCTCAACTGAGCCTTCACCGCTCAAAGGCTCTAGTCACCTAAC
AGTTGCACCTTTCTTTGCGAGCTAATAATTCAGAGTGCTTCACAAGGGAG
AATAGTACAGTGAGCCACAATGGCCTAAGAGGATTTGTAAGCCTTGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_b23.b1 MSMg01no265_b23.b1 CHROMAT_FILE:
MSMg01no265_b23.b1 PHD_FILE: MSMg01no265_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:31 2005
         (320 letters)



>mm_chr1_46428794_46429514
          Length = 721

 Score =  449 bits (232), Expect = e-130
 Identities = 295/316 (93%), Gaps = 3/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagttatcaggatacaaaaacattgtagaatgcagacctgggacagcagcaagt 63
           |||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 518 ggaatttagttatcagaatacaaaaacattgtagaatgaagacctgggatagcagcaagt 459

                                                                       
Query: 64  caagagaaactgcccacctgccacccagtttcatagctttgggaggggctcacttccagc 123
           |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 458 caagagaagctgcccacctgccacccagtttcatagctttgggaagggctcacttccagc 399

                                                                       
Query: 124 aaatgtcctgtacatacactgtgaagttaccca-gtacttccaagtgtacagcctaagag 182
           |||||||| | || ||| |||| |||||| ||| |||||||||||| |||||||||||||
Sbjct: 398 aaatgtcccgcacgtaccctgttaagtta-ccaggtacttccaagtatacagcctaagag 340

                                                                       
Query: 183 gtaaggcctgcctgaattcagtccatataggttggcttcacccctccagcagatctctaa 242
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 339 gtaaggcctgcctgaattcagtccatataggttggcttaacccctccagaagatctctaa 280

                                                                       
Query: 243 ggtactatagtcagtagtcaccctaagaagaggcctgactgactggattgtt-ctaaggg 301
           || ||||||||||||||||||||||||||||||||| |||||||||||| || |||||||
Sbjct: 279 ggcactatagtcagtagtcaccctaagaagaggccttactgactggatttttactaaggg 220

                           
Query: 302 tcagacaccttcacac 317
           ||| ||||||||||||
Sbjct: 219 tcaaacaccttcacac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space:   221432
Effective search space used:   221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)