BAC Information

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BAC

Clone NameMSMg01-265B24
Chromosome1 (Build37)
Map Location 158,552,451 - 158,719,111
singlet/doubletdoublet
Overlap geneAbl2, Tor3a, C530043G21Rik, LOC433368
Upstream geneLhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026
Downstream geneRalgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265B24.T7 (MSMg01no265_b24.b1)MSMg01-265B24.TJ (MSMg01no265_b24.g1)
ACCAG406479AG406480
length746750
length of high quality
(start - end)		234 (119 - 352)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no265_b24.b1 PHD_FILE: MSMg01no265_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:31 2005CHROMAT_FILE: MSMg01no265_b24.g1 PHD_FILE: MSMg01no265_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,718,897 - 158,719,111)(158,552,451 - 158,552,742)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAG
AGATTCCACAGTTTAAGTAGATGTTTATTTAGCAGAACAAAGCAAGCTCT
CCGAACAGATTTTGCAGTGGGCTATGACACAAGGTGGGACACTGTGTTCT
TTGTTGTGGGTTTTAAAGGAACTTTGATAAATTTTAATGAGATGGATATC
ATATTCATGGGGTAAGGTGATTTTCTCCCCTTTTAGTCTTGGTAGACTAG
ATTCACTTGTAGAGAATCCCTTCCCATGATCCCCTAGAAAGGGCCACATA
GCCTTAGTGTACATATACGGCAAAATACCCAGGGCACTTTCACTTTTGGC
AGAGTTTTTTACAACTGATCTACAGCCTCAAGGCTGTTTAACCACTAAGA
GTGTCCTGGCCGCCAGGAGATGCAGACACCAAGACACAGCTGGGCTTTTC
TTGATTAGCTCAAATCAAACTCCTTGTTGAGACAACTCAGGTTCCCGTGT
GGATCTCATGGTTATCAGGCGAGCAACCTGATACTGCCCTGAAAGCTGTA
ACCCAGGTTTTTACGCAGACTGGTGGGCTGCACAAACAGAAAGACTTGGG
CTGTTCTCCGGACTGCTCTTCCAGCTCCTCAGCTTCTATTTCATCCTTCT
TGCTCTACTTCACCGAGGTTAAATTATACTGTTTTATCTCCCTAAATTCC
CCTCAAGTCGCCCCCTGTAATCTAACCTAATTTCCACTCCACTCCC

GCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGTACAGTCCGTAGAGGATGAC
CTAACTAACTCTTGGCTTAGTCTTTGTAACGTTCTGAGCCTAAGTGTATA
CCAACAGTTCACATGCAGCCCTCACTCAGAGCTCTGAATTCTTGGCTGTT
TGACTCACTCACTGGATACCTTTCTCATTTGTGTCTTTCAGAAGTTTTGC
ACCGCCCGTTTGGCTGTGATGCTGAATCTCAGGCACTGAATGAAGCGATC
AGGTGGAGCTCCAAGGAGAACTTGCTGGGAGCCACTGAGAGTGACCCTAA
TCTCTTTGTTGCACTTTATGACTTTGCGCCACGCGGTGATAACACACTCA
GTATCACTAAAGGTGAGACATCTCTGAACTGTGCTTTCTAGTTTCCTAGG
CTGAGACATGAAGCGCCACGTGCTGGCTTCTGCCGCTGACACTGACCAGG
TGACCTGTGCTCAAGCACTTTTGGGTCATCCTTCTTTTTACCTGCTTCTG
TGGCTTTGCAAAGCAGTGACTAAGAACATTACTGGTTAGATAACATTTTC
TCATCGTTTTCCAAGATAGTTTCTTCACCAAGAAAACGTTGGTAAAGTCT
TACTAGTTAATAGTTATAACGACTTTTAGTATGTTGCTCAGGGACCAGGA
GTCCCTTTATATCATAATTGACAATGGTTTCTCAAAAACCCTGATATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_b24.b1 MSMg01no265_b24.b1 CHROMAT_FILE:
MSMg01no265_b24.b1 PHD_FILE: MSMg01no265_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:31 2005
         (234 letters)



>mm_chr1_158718697_158719331
          Length = 635

 Score =  369 bits (191), Expect = e-107
 Identities = 209/215 (97%), Gaps = 1/215 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggctatgacacaaggtgggacactgtgttctttgttgtgggttttaaaggaactttgat 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gggctatgacacagggtgggacactgtgttctttgttgtgggttttaaaggaactttgat 356

                                                                       
Query: 61  aaattttaatgagatggatatcatattcatggggtaaggtgattttctcccctttta-gt 119
           ||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| ||
Sbjct: 355 aaattttaatgagctggatatcatattcatggggtaaagtgactttctccccttttaagt 296

                                                                       
Query: 120 cttggtagactagattcacttgtagagaatcccttcccatgatcccctagaaagggccac 179
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 catggtagactagattcacttgtagagaatcccttcccatgatcccctagaaagggccac 236

                                              
Query: 180 atagccttagtgtacatatacggcaaaatacccag 214
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 atagccttagtgtacatatacggcaaaatacccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space:   140850
Effective search space used:   140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no265_b24.g1 MSMg01no265_b24.g1 CHROMAT_FILE:
MSMg01no265_b24.g1 PHD_FILE: MSMg01no265_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:31 2005
         (292 letters)



>mm_chr1_158552251_158552942
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtacagtccgtagaggatgacctaactaactcttggcttagtctttgtaacgttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtacagtccgtagaggatgacctaactaactcttggcttagtctttgtaacgttctg 260

                                                                       
Query: 61  agcctaagtgtataccaacagttcacatgcagccctcactcagagctctgaattcttggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctaagtgtataccaacagttcacatgcagccctcactcagagctctgaattcttggc 320

                                                                       
Query: 121 tgtttgactcactcactggatacctttctcatttgtgtctttcagaagttttgcaccgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttgactcactcactggatacctttctcatttgtgtctttcagaagttttgcaccgcc 380

                                                                       
Query: 181 cgtttggctgtgatgctgaatctcaggcactgaatgaagcgatcaggtggagctccaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtttggctgtgatgctgaatctcaggcactgaatgaagcgatcaggtggagctccaagg 440

                                                               
Query: 241 agaacttgctgggagccactgagagtgaccctaatctctttgttgcacttta 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacttgctgggagccactgagagtgaccctaatctctttgttgcacttta 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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