BAC Information

Click to search

BAC

Clone NameMSMg01-265E03
Chromosome1 (Build37)
Map Location 74,086,880 - 74,087,190
singlet/doubletsinglet
Overlap geneTns1
Upstream genePinc, LOC672208, LOC100043291
Downstream geneRufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265E03.T7 (MSMg01no265_e03.b1)MSMg01-265E03.TJ (MSMg01no265_e03.g1)
ACCAG406573AG406574
length752746
length of high quality
(start - end)
318 (45 - 362)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no265_e03.b1 PHD_FILE: MSMg01no265_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:41 2005CHROMAT_FILE: MSMg01no265_e03.g1 PHD_FILE: MSMg01no265_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGCATTCAAGAAGGCAGAGAATGAAGAACCAGAAATACTGACAAC
CAACCCTGGCTACGTAGCAAGTTTGAAGCCAGCTTGTGCTTGTGAGACCC
TGTCTTCATAAACAAACAGCCTGCAAACAGACTGTACTGGCGATCACAAG
AAGGTACCCTAGAGTTGCTAAAGTTTGGCATTGCTGCCTAGCTTCCAGCT
GGAAGTAAGGGGGATCCTGCCCCAGTCGTGCTGTTGACGGAGGAGAAGGT
AGAAAGCCCAGTGGTGTGATAGGGAAAAAGGGACGTGGTTGAGAAAGGTA
TGGAAGTCTTTTNGTATGTATGCCCCCCCCCGCCCGAGAGTGAGCGAGTG
CCAGGGAGTGATGTCACCCCCACAGACTGAAAAGAAAAAATAGAGAAGGA
GACAGGAGATCTAGGAACCTGAAATTAAGAGTAAGAGGGGGTTCTATGTT
TTTGGTATGCTACTTAGGAACAGAGGCGAGAAGAGCAGGATTTAACATGG
GATCTTCTAACTCCTAAACTGGACATGGTGTCCCAAACTCCAGAGGGGCC
CCTGGTGTGTTTGCATGCATGAGAACAGGATTTAAGTTGGCTGAGGTGAT
CCAGGGTCACCTCTGACCTCTAGTAAGGGCGGCGATTGCAACACTTGATA
TGGTGCTAGCGAGGAGTTTCCAGCTTGTGTTTCCAAGGCTTTGCCCTTTC
CN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAAGCTTTGTAGAG
AGACTGTGTCAAAACACACACACACACACACACACACACACAAAGCCAGT
AGTGGTAAGCACCTTTAATCCCAGCACTTGGGAGGCAGTACCAGGGAAAT
CTCTGTGAGGCCAGCCTGGTCTACAGAACTATTTCCAGGATAGCCAAAGC
TACACAAAGAAACCCTGTCTTGAAAAACAAAAACAAGCACATAAACAAAC
AGCAGCATTTATGCTAAGGGACAGCTGTAAAGCACATGACAAACTTAATT
CTTACACATACACATTTATTTTCACACACCCCCCCACACACANACAAAGA
CAACTATAAATTCTAGAGCACAAATTTAAAAGAACTTCATAAGCATAAAT
GAACCGATGAATCCCTGGAGGCCCTGAGGTGCAGATGCAGACAGAGGTAG
CCATAGGTATGAGACAAGTTATAAGTCATGGGACCTCACTCTAGGAGTAT
CAACAACAGTCATGGTGGAACAGAGCAGCAAAGCCCTGACAGAGAAGAAC
ATCATTGTTCTCAGTGAGTGAAAGGATGAAGAATACAAGAGACTGGAGAG
TGGCCATATTGGGGAGGACACTGGAGGAAGGAAGGAAGGGAGGGAGGGAG
GAATATTNTTTTCCTTCTCTTCNTGGCCTATTCTGTCTCTAATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_e03.b1 MSMg01no265_e03.b1 CHROMAT_FILE:
MSMg01no265_e03.b1 PHD_FILE: MSMg01no265_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:41 2005
         (318 letters)



>mm_chr1_74086558_74087275
          Length = 718

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagcattcaagaaggcagagaatgaagaaccagaaatactgacaaccaaccct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ggaattccagcattcaagaaggcagagaatgaagaaccagaaatactgacaaccaaccct 574

                                                                       
Query: 64  ggctacgtagcaagtttgaagccagcttgtgcttgtgagaccctgtcttcataaacaaac 123
           |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 573 ggctacgtagcaagtttgaagccagcttgtgcttatgagaccctgtcttcaaaaacaaac 514

                                                                       
Query: 124 agcctgcaaacagactgtactggcgatcacaagaaggtaccctagagttgctaaagtttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agcctgcaaacagactgtactggcgatcacaagaaggtaccctagagttgctaaagtttg 454

                                                                       
Query: 184 gcattgctgcctagcttccagctggaagtaagggggatcctgccccagtcgtgctgttga 243
           |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 453 gcattgctgcctagcttccagctggaagtaagggagatcctgccccagttgtgctgttga 394

                                                                       
Query: 244 cggaggagaaggtagaaagcccagtggtgtgatagggaaaaagggacgtggttgagaaag 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tggaggagaaggtagaaagcccagtggtgtgatagggaaaaagggacgtggttgagaaag 334

                      
Query: 304 gtatggaagtc 314
           |||||||||||
Sbjct: 333 gtatggaagtc 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)