BAC Information

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BAC

Clone NameMSMg01-265I09
Chromosome1 (Build37)
Map Location 194,916,800 - 194,917,088
singlet/doubletsinglet
Overlap genenone
Upstream geneRcor3, Kcnh1, Hhat, A730013G03Rik, Sertad4, LOC100039677, Syt14
Downstream geneAA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g, LOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265I09.T7 (MSMg01no265_i09.b1)MSMg01-265I09.TJ (MSMg01no265_i09.g1)
ACCAG406763AG406764
length713769
length of high quality
(start - end)
228 (81 - 308)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no265_i09.b1 PHD_FILE: MSMg01no265_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:02 2005CHROMAT_FILE: MSMg01no265_i09.g1 PHD_FILE: MSMg01no265_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAGCTCTTGACTTGGCTCAAGGACTTCCTAGGACATTGGAACACTGGTG
GAGGCTAATCTATTTTACCTATATGACAGAGAGCACACGGATCCATACAG
CAGACTAACATGGGGACAGGTTTGGAGCATGCGTGCTATGGGAATGTCAA
GGTTCCAGGAGGCTAAGTTTCCATTAACCTTTCGCCTCAGGACTGCGTCC
AGGGTTTTAGGCCTGTCACGCGTGTCCCTACTGGAGTGGGTGTGGCAGTT
CCCGGTGGGGCTGTTTCTGGTGCAGAACATGGATAGCTCCAGCTGCTTGT
CCTCTTTCAAGTCAATTCCCCNACCACCCCCTCACTATATGTCATAGCAA
CAAGGTTTCCCCCCCCCGCCCCAAAATATAAAAAACAAGGTGAAAGAAGT
CAAGTATGTAATGGACCTGTCAGATGATCCTGCTGCTGGGGAAAGCCCAG
AAAAGGTAAGCTTACAAAGGTGTAACGAAGATCAATGACCATCCAAGCCA
GGTTCTGTACAATCAGTTGATGCCCAAAACGTTATAAAGGATCTGTTGTG
ATAATAAAAATGGTCTAAACTTGAATTGCATTGCTATTTTCTAACTCTGC
TAATTATTATAAAACTTCCCACTATCCCGGTAATATTAAGCATTATTCTG
CGATAATACAGACTTCATTATGAGAACATGTAAATATAATCTTTGTTTTA
TCACCAAAGCTTA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACCTCCAGCTTATTAAAACGACA
AATTACCCACCGTGAGAACTGCAGGGCGCATTCAGATAGAAAATGGTGTC
CTTTTTTTTTATGACGTGATTTAATTAGGAGCTCTCTCTCCATCCACTTA
GTCCTCGGAGTGAGGCGAAGAAAGCGCTGAGAGGAGCAGTTGGCCTCTGC
CTCCGGCTCTTCCTTACAGATGCCACCTCTCAGAGAAGAGGGGAAACCAC
TTTGGGAACCGATTCAAGCTGGTATTTTCCAGGCCCACGGGAGATCCTCA
GCAGAAAGGCCTTTGGCGTGNGTTTCCCCATCAGCCCCGGCATCTTTTAT
AGAGAGGGTTGTTTTTCCCCCCCCCCTTGAACAAGAAAAAAGATCCTTGC
CCGCAGGTATCTTCTGCATCATGGTGATGGCGAAAACACGGATTCCGAGG
GTCATTCTGATAGAAGTGAACACTTCTGAAGGATGTTTACAGGGAGGAAT
AGTGGGAGGATGGACCCAGATGGTCCGAGCTTCATAGGCTGAGGCATTTC
TAAAATTGGTTTGTTAATGCGAGTTTTTAAAGTCTGATTTCCATTTTGGG
ACATTTGAGTTTGACATTTACGATGAATCCCAACACACTTTTTGTATTTT
AAATAAAAACTGGTTTTAACATGTATATTAAATCTGTCTTGTCTAAGTGT
TACCCATGTGCCCTCCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_i09.g1 MSMg01no265_i09.g1 CHROMAT_FILE:
MSMg01no265_i09.g1 PHD_FILE: MSMg01no265_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:02 2005
         (288 letters)



>mm_chr1_194916600_194917288
          Length = 689

 Score =  497 bits (257), Expect = e-145
 Identities = 281/293 (95%), Gaps = 9/293 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctccagcttattaaaacgacaaattacccaccgtgagaactgcagggcgcattcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctccagcttattaaaacgacaaattacccaccgtgagaactgcagggcgcattcaga 260

                                                                       
Query: 61  tagaaaatggtgtccttttttttt-atgacgtgatttaattaggagctctctctccatcc 119
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaaaatggtgtcctttttttttaatgacgtgatttaattaggagctctctctccatcc 320

                                                                       
Query: 120 acttagtcctcggagtgaggcgaagaaagcgctgagaggagcagttggcctctgcctccg 179
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 321 acttagtcctcggagtgaggcggagaaagcgctgagaggagcagtcggcctctgcctccg 380

                                                                       
Query: 180 gctcttccttacagatgccacctctcagagaagaggggaaaccactttgggaaccgattc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctcttccttacagatgccacctctcagagaagaggggaaaccactttgggaaccgattc 440

                                                                
Query: 240 aagctggtatttt----ccaggcccacgggagatcctcagcagaaaggccttt 288
           ||||||| |        ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagctggga----gaaaccaggcccacgggagatcctcagcagaaaggccttt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 689
Length adjustment: 9
Effective length of query: 279
Effective length of database: 680
Effective search space:   189720
Effective search space used:   189720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)