BAC Information

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BAC

Clone NameMSMg01-265J13
Chromosome1 (Build37)
Map Location 123,651,364 - 123,651,653
singlet/doubletsinglet
Overlap genenone
Upstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
Downstream geneLOC666971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265J13.T7 (MSMg01no265_j13.b1)MSMg01-265J13.TJ (MSMg01no265_j13.g1)
ACCAG406817AG406818
length810769
length of high quality
(start - end)
271 (94 - 364)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no265_j13.b1 PHD_FILE: MSMg01no265_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:08 2005CHROMAT_FILE: MSMg01no265_j13.g1 PHD_FILE: MSMg01no265_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTNNNCNTTTCTNNNTTTTTATCACTATTTCTTTTNNNNCGTTC
TATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTCCAAAATCTCTAGGAAAAAAAAAAGCCCAGATTTTAATGATTTT
TTTTTACTTCGGCATGATGCTTTAGATGCTCATCTATTGCATGTGTTGTA
CAAATACATTCATAGGGGAATGCATACATACATACACAAGCATGTGTAGA
GGCTGCATGCTACAAGGTGGTGTCTTCCTTGAACACTCTCCAATGTTACT
TTGGGAAACAGGTTTTTTTTTTTTTTTTTACTGAAGCTAATGCTCATTGG
TTGGCTAGCCAATGAGAGCTACAGATGTTCCTGACTTGACTTTCCCAGCA
CTGAAATTACTTATAAGTCGGCTTCCAAGACGANACCCCGTATGTGTGAA
TGGTCTGAGTTCAGGCCCCCATGCTTGTAAAAAAAAAAAAGTACCATCTG
AGCCATGTTCCCATCCTCAGCTTAATTTTCTTATGGAGACCTAATCCAAT
TTGAGAGAAGATAATACCCAAAATCCTTTAAACACTAATTCAATAGCTGT
ATAATTGTCCCTCACTAATAAAACCCTGCCTCACCATGTATTGTATGAAC
CTTTATTTCCCATTGAATAGTGAACCAAGAGGGGGGAGTTTTCAAAATTA
TCAATTTAACATTATATTTGAGAAAAAAAGTGTATTCCTCTTTGAAGTCA
AAAACATTAATTACTCCCAACAATATTAGCCTCTAAAGTCTCATATCCAT
CTTTTCCGCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGGTGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGAAGGCTTGTACAACAACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGATATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGTTTTTATATCCCCACCCACCCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGCTCATAGCATCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTTATGAAATTTCTAGCCCAATGGAAGGAACCTGCAGGGCATCATCCTGA
GTGAGGTAACACATTCTCAAAGGAACTCACACATTATGTACTCCCTGACA
AGTGCGATATTAACCCAAAACCTATGATATCCCCAGAAAAAAGGATACTG
TTTCTCCCTAAACACTTGGAGTCTTCAATTATACATGAAGGACTTTAATT
TGAGTACACCTACTGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_j13.b1 MSMg01no265_j13.b1 CHROMAT_FILE:
MSMg01no265_j13.b1 PHD_FILE: MSMg01no265_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:08 2005
         (271 letters)



>mm_chr1_123651160_123651835
          Length = 676

 Score =  460 bits (238), Expect = e-134
 Identities = 267/290 (92%), Gaps = 23/290 (7%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttccaaaatctctaggaaaaaaaaaagcccagattttaatgat----tttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||
Sbjct: 205 gaattctttccaaaatctctaggaaaaaaaaaagcccagattttaatgatgttttttttt 264

                                                                       
Query: 61  ttacttcggcatgatgctttagatgctcatctattgcatgtgttgtacaaatacattcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttacttcggcatgatgctttagatgctcatctattgcatgtgttgtacaaatacattcat 324

                                                                       
Query: 121 aggggaatgcatacatacatacacaagcatgtgtagaggctgcatgctacaaggtggtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggggaatgcatacatacatacacaagcatgtgtagaggctgcatgctacaaggtggtgt 384

                                                                       
Query: 181 cttccttgaacactctccaatgttactttgggaaacagg-ttttttttttttttttt--- 236
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   
Sbjct: 385 cttccttgaacactctccaatgttactttgggaaacagggtttttttttttttttttttt 444

                                                             
Query: 237 ---------------actgaagctaatgctcattggttggctagccaatg 271
                          |||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttttttttttttcactgaagctaatgctcattggttggctagccaatg 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 676
Length adjustment: 9
Effective length of query: 262
Effective length of database: 667
Effective search space:   174754
Effective search space used:   174754
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)