BAC Information

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BAC

Clone NameMSMg01-265M13
Chromosome1 (Build37)
Map Location 50,124,755 - 50,125,027
singlet/doubletsinglet
Overlap genenone
Upstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981, EG666962
Downstream geneEG666970, LOC100041993, Tmeff2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265M13.T7 (MSMg01no265_m13.b1)MSMg01-265M13.TJ (MSMg01no265_m13.g1)
ACCAG406947AG406948
length899815
length of high quality
(start - end)
277 (37 - 313)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no265_m13.b1 PHD_FILE: MSMg01no265_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:23 2005CHROMAT_FILE: MSMg01no265_m13.g1 PHD_FILE: MSMg01no265_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGG
TTTTGTTTTTCATTGTGTATGTACATCAGTACTGCATAGAAAATGTTACA
CTGTCTGGCTTAGATCAGAAAAAAAAGTGGAGAAAAACATACACAATAGT
TATCATTTTCTCAGGTATTCCAAAACCAATCATCATACATTCAATTTTTA
AGAAATAGTTAATGAGCCATATAAAATTTCAAGAGTATCTGAGGATTTTA
TCTGTTATCTCTGTGAATAGTGCAATTATCATAATTTTTCTTATGGTGGA
AGGCAAATTGATATTTTTTTTGAGCTCCACATGGTATCTGCAAGAGAAAA
AATTTTGGTTAAATTTCCCCCAAACGAACCCCTTTTATTATTTTTTTTTT
TTTAGTTGCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAGATGGG
GGGGGGGGGGGGATCTCTTATTTATATTATATCATTATGGACATAATCCA
CTTGTATTATATATTTATGTTACAATTAAACATTATATATTAATTTTTAC
ATAATATTTACATACTCCCTCACTTTCTCTTAACTTATTGCGAGTTTTAT
TTATGTTCCTCGCTATTTATTATCATCCCCTAGACATCTTTTTGTGATTA
TTCATTTTATATTATTTCTCTTGTTATCATGATTGTTTATATTTTCTTTA
TGTTTACATTAATAATATGTATTACTAGTACTTCTGGTGCGATTATTTAT
TTTTTGTGNTTGTCGAATATATAAATTTGCTTCTATAACCCATGCTCAAT
ATTCATTCTACCTATAAATAACATAAATTTATTTATTCTTAACGCTCTCT
ATTTTACATTATTATTTATAACTACATATTATTTCATCTTATTTCCTTN
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACGTAACTAAGGGGTCATGTCCT
ATTATTTGGCAATGTACCCGGTTCATTCTGAGGTTGTTCCAGGAGGCCCT
TATCTCAAAAAATGTTCTTGGAACAGTCTTTAGTTGGGAGGGTTCGAACT
CTAGGGTGAGGAGTTCAGGAATGCATTCTGGGGTGAAGAGTTCAGGAGTG
TTCTGGGAACAATCTCTAGATGGGAGGGGTCGGGCTCTGGGGTGAGGAAG
AGTTCAGTAATTTTTCTATCTTTTTTCTTCAAGTCCAGTAGTTGGTTGTG
AGCCTCTGAATCTGTANATTTATTTCCCCGGACAGCCCCTCATTAGGTAG
ATGTATAAGGNTCCTCCCCCCCCCCCACCTAAAAAAAAAAAAAATAGTGG
GTGGGGTTCGCCTCTCATCATATTTCCATCTTTTTTCAAACCTATTTTAC
ATTTAATATTATTTACTATCTACTACACTTAAATTATACAACACAGTGCA
TAAATATTATTTACCTCCAATTAAATTCTTTCTTACTTCTTCTACCCACT
CCGCCTCTTCAATTTCTCCAAATTTCTATACCACCTACCGATTATCTTAA
TACTTATATCTTCTCGCACTACTCACCTTCTTTTTATCTCACCTTTCCTC
GACTTACCATTTTCTCACTATAATTATCATCTTATTCACCCTCTCAAACA
AAACTATCCTTATTTCTCCTTCAGTTACTTTCTGTTCTCTATACATCTAT
ACTACCACCTACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_m13.b1 MSMg01no265_m13.b1 CHROMAT_FILE:
MSMg01no265_m13.b1 PHD_FILE: MSMg01no265_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:23 2005
         (277 letters)



>mm_chr1_50124551_50125227
          Length = 677

 Score =  513 bits (265), Expect = e-150
 Identities = 271/273 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgggttttgtttttcattgtgtatgtacatcagtactgcatagaaaatgttaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattctgggttttgtttttcattgtgtatgtacatcagtactgcatagaaaatgttaca 418

                                                                       
Query: 65  ctgtctggcttagatcagaaaaaaaagtggagaaaaacatacacaatagttatcattttc 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctgtctggcttagattagaaaaaaaagtggagaaaaacatacacaatagttatcattttc 358

                                                                       
Query: 125 tcaggtattccaaaaccaatcatcatacattcaatttttaagaaatagttaatgagccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcaggtattccaaaaccaatcatcatacattcaatttttaagaaatagttaatgagccat 298

                                                                       
Query: 185 ataaaatttcaagagtatctgaggattttatctgttatctctgtgaatagtgcaattatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ataaaatttcaagagtatctgaggattttatctgttatctctgtgaatagtgcaattatc 238

                                            
Query: 245 ataatttttcttatggtggaaggcaaattgata 277
           ||||||||||||||||||||||| |||||||||
Sbjct: 237 ataatttttcttatggtggaaggtaaattgata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)