BAC Information

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BAC

Clone NameMSMg01-265P09
Chromosome1 (Build37)
Map Location 131,796,297 - 131,796,483
singlet/doubletsinglet
Overlap geneThsd7b
Upstream geneLOC100042732, LOC100042745, LOC100042740
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265P09.T7 (MSMg01no265_p09.b1)MSMg01-265P09.TJ (MSMg01no265_p09.g1)
ACCAG407076AG407077
length754770
length of high quality
(start - end)
187 (120 - 306)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no265_p09.b1 PHD_FILE: MSMg01no265_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:37 2005CHROMAT_FILE: MSMg01no265_p09.g1 PHD_FILE: MSMg01no265_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAAGCATCCGCGGAATCTTTG
ATATCCCAAGAGAAATCATAGCATTCTTAGGAGAGGATGATGGGAGGTGA
TGTTGTATTGGAGCCCCAGAGAAGTGAAGATTTTGCTGGGATTGAAGTCA
GAGGAAGGGGGACTGTGAGCTAGGGATGGAGGTATCCTCTGGAAATTGAA
CAAGACAAGGACAAATTCTCTATAAGAGTCAGCTAGATGAACATTACCTG
CTGCTATCTTGGCTGGAGGTAGATCTCACACTTTGAATTGTGGGAACTCT
AATAGAATTTTTTTTTTTTTTCNCNATCCACTGACTCTATGGGAAATTTT
TTAGGTGATTTCCCCAGGACAAACCCCCTAGTGGAAAGAANAGAGNNGAG
AANNNCNCNGCCGAAAACCNAAAACCCAAAGGCGGGGGGGGGGGGGACCC
CGCCCGCAAGGNAAACAAACAGANACAGAGGAAGGCCAGGACAGACACCN
AANACAAAAGCGCGCGCGCGAGAGCGAGCCCGCGCGAAACCAAAAAAAAC
AAACGAACAAAACAACAACAAACCAAACAACCACCCCACACCCCCACCCA
CAAGCCACAGACGCAACACCCAAAAAAACGCCACACGCACACGCCCGCGC
AGCGCGACCAGCACAACCAAACAAACAAACAAGAAAAACACCCCGAGGAA
CGCACACCACGCACGCACAACAAAAACCAAACACACAACAAACAAAAAAC
ACAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGACACTGAAA
CTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGACATGGGTACAGGGAA
AAATTCCGGAATAGAACAGCAATGGCTCGTGCTGTAAGATTGAGAATCAA
TAAATGGGACCTCATAAAATTGCAGAGCTTCTGCAAAGCAAAAGACACCG
TCAATAAGATAAAAATGCCACCAACAGATTGGGAAAGGATCTTTACCTAT
CCCAAATCAGATAGGGGACTAATATCCAATATATATACAAAGAACTCAAG
AAGGTGGATGCCTGATTTTCTTTTTAACCCCACCCCCCCATGGCGCTCAG
AGCTGAGCAAAGAATTCTCACCTGAGGAATACCGAATGGCTGAGCAGCAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACT
CAGGAGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTC
CATTGTTGGTGGGATTTGCAAGCTTGTACAACCACTCTGGAAATCAGTCT
GGTGGTTCCTCAGAAAATTGGACATAGTACTCCTGGAGGATCCCGCAATA
CCTCTCCTGGGCATATATTCAGAAGATGTTTCAACCTGTAAGAAGACACA
TGCTCCACTATGTTCATAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_p09.b1 MSMg01no265_p09.b1 CHROMAT_FILE:
MSMg01no265_p09.b1 PHD_FILE: MSMg01no265_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:37 2005
         (187 letters)



>mm_chr1_131796097_131796683
          Length = 587

 Score =  346 bits (179), Expect = e-100
 Identities = 185/187 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagtgaagattttgctgggattgaagtcagaggaagggggactgtgagctagggatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagtgaagattttgctgggattgaagtcagaggaagggggactgtgagctagggatgg 260

                                                                       
Query: 61  aggtatcctctggaaattgaacaagacaaggacaaattctctataagagtcagctagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtatcctctggaaattgaacaagacaaggacaaattctctataagagtcagctagatg 320

                                                                       
Query: 121 aacattacctgctgctatcttggctggaggtagatctcacactttgaattgtgggaactc 180
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaggacctgctgctatcttggctggaggtagatctcacactttgaattgtgggaactc 380

                  
Query: 181 taataga 187
           |||||||
Sbjct: 381 taataga 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)