BAC Information

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BAC

Clone NameMSMg01-266A10
Chromosome1 (Build37)
Map Location 139,519,945 - 139,520,232
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
Downstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266A10.T7 (MSMg01no266_a10.b1)MSMg01-266A10.TJ (MSMg01no266_a10.g1)
ACCAG407126AG407127
length742739
length of high quality
(start - end)
319 (46 - 364)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no266_a10.b1 PHD_FILE: MSMg01no266_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:42 2005CHROMAT_FILE: MSMg01no266_a10.g1 PHD_FILE: MSMg01no266_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAA
TCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGT
ACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCT
GATAAACAGCTTCGGTGTTTTAGCTGCCACCCCCCCCACAAACTCAAACA
AGTCAATGGCCTTTCTCTATACCCCGAATAAACAGGCTGAGAAAGAAATT
AGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGG
CGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAAT
CTCTGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCA
TGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAA
AGCAATCTACAGATTCAATGCAATCCCCATCATAATTCCAACTCAATTCT
TCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGGAATN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGACCTTTCATTCATAAGCAAG
CACTGGTAGGTTATGTAAACCACAGGGTATAATTCATTCTAATAAATTCC
ATATTTGTGGGGGGATGTATACATGCATGAATATGAGAGATAGAGAAAGA
GAGATTCATTCTATAAATTCAGTTATTAGAGAGAACCCTGACTAATACAG
ATTTCAGCTCCAGAAGAGGTTCTATAGCCACAGAAGTATTAGGATGAATA
TTTTAAATATTTGGAATAAGCTTTTCGATTTGTCAACACATATAGCTAAT
GAAATCTCTCCTGTTTCTTAATTCCTCCCCCGCCCCCTCAGAGAATATGG
AAAGCCTATGATAACTATTTCATAAACTTAAGGAGGCAAATATATTTGAT
TATACCAATACAGAAATTGTAAGAGGCAACTAATTTGGTGAGTCTATCTA
TATAAATTTTAATAATTTGTAGAAAAAATAGAGAAAAATCATGATGCTGG
TCAGTAGTTCCTCTCATCTTTAGATAAATTCATAAAGGAAAAGAACGAGA
TCTTTAGTAAAATTAACCAACTGCAGTCATCTCAGAATATGGCAAAAGAC
AACAATGAATTTAGGGATAAAAATTGACCAACAATGAACATAGTGACAAA
ACTGACCAGCTCCAGATATGCATAAAAAGTGTTAAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_a10.g1 MSMg01no266_a10.g1 CHROMAT_FILE:
MSMg01no266_a10.g1 PHD_FILE: MSMg01no266_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:42 2005
         (291 letters)



>mm_chr1_139519745_139520435
          Length = 691

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggacctttcattcataagcaagcactggtaggttatgtaaaccacagggtataattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggacctttcattcataagcaagcactggtaggttatgtaaaccacagggtataattca 260

                                                                       
Query: 61  ttctaataaattccatatttgtggggggatgtatacatgcatgaatatgagagatagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctaataaattccatatttgtggggggatgtatacatgcatgaatatgagagatagaga 320

                                                                       
Query: 121 aagagagattcattctataaattcagttattagagagaaccctgactaatacagatttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagagattcattctataaattcagttattagagagaaccctgactaatacagatttca 380

                                                                       
Query: 181 gctccagaagaggttctatagccacagaagtattaggatgaatattttaaatatttggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctccagaagaggttctatagccacagaagtattaggatgaatattttaaatatttggaa 440

                                                           
Query: 241 taagcttttcgatttgtcaacacatatagctaatgaaatctctcctgt 288
           ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 taagctttttgatttgtcaacacatatagttaatgaaatctctcctgt 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)