BAC Information

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BAC

Clone NameMSMg01-266G08
Chromosome1 (Build37)
Map Location 49,615,339 - 49,615,624
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266G08.T7 (MSMg01no266_g08.b1)MSMg01-266G08.TJ (MSMg01no266_g08.g1)
ACCAG407395
length727732
length of high quality
(start - end)
---285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no266_g08.b1 PHD_FILE: MSMg01no266_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:10 2005CHROMAT_FILE: MSMg01no266_g08.g1 PHD_FILE: MSMg01no266_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
ATACCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXX
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTAGCTTTCTCTTTCTCATAATTGTT
GATGTTATTGAATCAAGGGTTTGTTATTGTCATCTCTTTTATGATTGCTC
ACTATTTTTTCCAGTATTCCTTTGCATCCTTCCATCATTTTGATGGCATA
ATCATCTAAATGTCTCTATATTTAATAGTTCTGGACAGAAAGAAATGACT
TTCCTGAAAGCACATGTGGAAGCTTCTGGTAAAGAGATCCACTCACCAAA
TCTGCTGGTATCCACCACTTTAAAACTGAGTGATTGACCAGCAGGTGGAA
CCTCCCATTTAGTTATCTCCNNTCTTGCCCCCATGAAACCCCATGGCACC
ATGCCATAAAGACCCCCCCGAAAAAATAAATGAAAGATTGGAGCCTTTCA
ATTGTTCTTATTAAAGGAACAATTCTGCTCTTGAGATACATGCCTGTATT
CTTTTAATTTTAAGTTACCTCCACCAATCCCAATCTAGCATTCTCTTTGC
CTCACAGAAACTAAATACACAACTATAGTATTTATTATCATCCCATACAT
TTAGCTCTTTGCCATTAGCTTATTGTTGCTGTTTTCTTTACCTTAATATA
TTTATCAATTGTCTTGTATATTAATGTGCTATGCTAAGCATATAATGTAG
GAAATGTCATTTCATATTTTTATTCTATCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_g08.g1 MSMg01no266_g08.g1 CHROMAT_FILE:
MSMg01no266_g08.g1 PHD_FILE: MSMg01no266_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:10 2005
         (285 letters)



>mm_chr1_49615139_49615827
          Length = 689

 Score =  507 bits (262), Expect = e-148
 Identities = 279/286 (97%), Gaps = 4/286 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagctttctctttctc-ataattgttgatgttattgaatcaagggtttgttattgtca 59
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tttagctttctctttctcgataattgttgatgttattgaatcaagggtttgctattgtca 260

                                                                       
Query: 60  tctcttttatgattgctcactattttttccagtattcctttgcatccttccatcattttg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcttttatgattgctcactattttttccagtattcctttgcatccttccatcattttg 320

                                                                       
Query: 120 atggcataatcatctaaatgtctc---tatatttaatagttctggacagaaagaaatgac 176
           |||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 321 atggcataatcacctaaatgtctcaagtatatttaatagttctggacagaaagaaatgac 380

                                                                       
Query: 177 tttcctgaaagcacatgtggaagcttctggtaaagagatccactcaccaaatctgctggt 236
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcctgaaagcacacgtggaagcttctggtaaagagatccactcaccaaatctgctggt 440

                                                         
Query: 237 atccaccactttaaaactgagtgattgaccagcaggtggaacctcc 282
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccaccactttaaaactgagtgattgaccagcaggtggaacctcc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 689
Length adjustment: 9
Effective length of query: 276
Effective length of database: 680
Effective search space:   187680
Effective search space used:   187680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)