BAC Information

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BAC

Clone NameMSMg01-266G09
Chromosome1 (Build37)
Map Location 49,615,339 - 49,615,623
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266G09.T7 (MSMg01no266_g09.b1)MSMg01-266G09.TJ (MSMg01no266_g09.g1)
ACCAG407396AG407397
length685719
length of high quality
(start - end)
244 (49 - 292)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no266_g09.b1 PHD_FILE: MSMg01no266_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:10 2005CHROMAT_FILE: MSMg01no266_g09.g1 PHD_FILE: MSMg01no266_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTAACTGATCGAACGGAGCCGCGGAATTCTTTGGTTAGCANTACCATCCA
TTTTTCAACGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGCTCTT
TATACATATTGGATATTGGTCCCCTATCTGATTTAGGATAGGTAAAGATC
CTTTTCCAATCTGTTGGTGGCCTTTTTGTCTTATTGATGGTGTCTTTTGC
CTTACAAAAGCTTTGCAATTTTATTATGTCCCATTTGTAAATTCTCGATC
TTACAGCAAAGCCATTGCTGTTCTATTCAGGAATTTTTTTTCCCTAGNGC
CCATATCTTTGAGGCTTTCCCCCACTTTCTCTTCTATTCTCCCACCCCCC
CTAGTTTTATGTGGAGTTCCTTGATCCACTTAGATTGGACCTTAGTACAA
GGAGAAGGAATGGATCAATTTGCATTCTCTACATGTTAACTCCCAGTTGT
GCCAGCACCATTTGTTGAAAATGCTGTATTTTTTCCATTGGATGGTTTTA
GCTCCCTTGTCAAATATCAATTGACCATAGGTGTGTGGGTTCATTTCTGG
GTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCACTATACCAGTACC
ATGCAGTTTTTATCACAATTGTTCTGTTTTACAGCTTTAGGTCAGGCATG
GTGATTCCACCAGAGGTTCTTTTATCTTTGACTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGCTTTCTCTTTCTCAATAAT
TGTTGATGTTATTGAATCAAGGGTTTGTTATTGTCATCTCTTTTATGATT
GCTCACTATTTTTTCCAGTATTCCTTTGCATCCTTCCATCATTTTGATGG
CATAATCATCTAAATGTCTCTATATTTAATAGTTCTGGACAGAAAGAAAT
GACTTTCCTGAAAGCACATGTGGAAGCTTCTGGTAAAGAGATCCACTCAC
CAAATCTGCTGGTATCCACCTCTTTAAAACTGAGTGATTGACCAGCAGGT
GGAACCTCTTTTTTTTTCTACCCCCCCCCCCCCTGTTTATGAAACCCCAT
GGCACCATGCCATAAAGACCCAGTTGTTAATTCCCTGAAAGATTGGAGCC
TTTCAATTGTTCTTATTAAAGGAACAATTCTGCTCTTGAGATACATGCCT
GTATTCTTTTAATTTTAAGTTACCTCCACCAATCCCAATCTAGCATTCTC
TTTGCCTCACAGAAACTAAATACACAACTATAGTATTTATTATCATCCCA
TACATTTAGCTCTTTGCCATTAGCTTATTGTTGCTGTTTTCTTTACCTTA
ATATATTTATCAATTGTCTTGTATATTAATGTGCTATGCTAAGTATATAA
TGTAGGAAATGTCATTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_g09.g1 MSMg01no266_g09.g1 CHROMAT_FILE:
MSMg01no266_g09.g1 PHD_FILE: MSMg01no266_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:10 2005
         (284 letters)



>mm_chr1_49615139_49615825
          Length = 687

 Score =  497 bits (257), Expect = e-145
 Identities = 277/285 (97%), Gaps = 3/285 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagctttctctttctcaataattgttgatgttattgaatcaagggtttgttattgtca 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tttagctttctctttctcgataattgttgatgttattgaatcaagggtttgctattgtca 260

                                                                       
Query: 61  tctcttttatgattgctcactattttttccagtattcctttgcatccttccatcattttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcttttatgattgctcactattttttccagtattcctttgcatccttccatcattttg 320

                                                                       
Query: 121 atggcataatcatctaaatgtctc---tatatttaatagttctggacagaaagaaatgac 177
           |||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||
Sbjct: 321 atggcataatcacctaaatgtctcaagtatatttaatagttctggacagaaagaaatgac 380

                                                                       
Query: 178 tttcctgaaagcacatgtggaagcttctggtaaagagatccactcaccaaatctgctggt 237
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcctgaaagcacacgtggaagcttctggtaaagagatccactcaccaaatctgctggt 440

                                                        
Query: 238 atccacctctttaaaactgagtgattgaccagcaggtggaacctc 282
           ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccaccactttaaaactgagtgattgaccagcaggtggaacctc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 687
Length adjustment: 9
Effective length of query: 275
Effective length of database: 678
Effective search space:   186450
Effective search space used:   186450
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)