BAC Information

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BAC

Clone NameMSMg01-266L18
Chromosome1 (Build37)
Map Location 109,601,589 - 109,601,904
singlet/doubletsinglet
Overlap genenone
Upstream geneBcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
Downstream geneLOC435640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266L18.T7 (MSMg01no266_l18.b1)MSMg01-266L18.TJ (MSMg01no266_l18.g1)
ACCAG407641AG407642
length750755
length of high quality
(start - end)		320 (46 - 365)683 (73 - 755)
definitionCHROMAT_FILE: MSMg01no266_l18.b1 PHD_FILE: MSMg01no266_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:36 2005CHROMAT_FILE: MSMg01no266_l18.g1 PHD_FILE: MSMg01no266_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATGTTCTTTCACCGAAGGTAGAACCTCCTGTCATAGTTTAATTC
TGAGTTGTACCATGAAGTTGCTAAACCACCAAGAAGGCAGAAGATGTAAA
CGCTTGAAAATAGCTGTACTTAGGGTTTCTTCTTTACAACTAACATCAGG
ACCCTGAGAAGACTAGCCTATAGCAGTTAAGAGACTCACAGATGAGACTC
CTTAACAAAATGCTCCACAGACACACAAGCTGCAGCTTACATCAGGTATC
TAAGTGAGCAAAGTCAACAGCCATGAAGCAGGGACAGCCCCTTCAGCCTG
GGTAGAATGAATCCTGTGTTCTGTACGACCCACCCACCCTGTTTTTGTTG
TATATTACTGAGGGCTTTGTACCATATTGCAAGGCAAAAGTTAGTTGATA
ACAAGATACTGTGAAAATGATGCTATTTATGGACTCATAATACATAAGAA
GATCTTGAAAATATGGATGGCAATGAAATAAGTATTATTGTATTCAATAC
CTTTGTCTAGTTTAAAGAGTATCTTGAGGAACAAAAAAGAAGATAAAATA
GAATTAGTTTTATTTTCCATTCTTGTAAGAAAATTGGTGCTATAGGCCAC
TTACATTANAAAAATGACACAGAAAATTATTCTACTATTTAAAGGTATGT
ACCCTCACTCTTAAATTACTATATACTATATAAGACATCACCAGACCAAC


CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCATGGTAATGAGGCATTTAGATAGGC
CCTGAGTGTTTAGCCAATGAGGTTCACTTTCTGGGCATTCTTTTCTGAAA
AAGGTATTTAATCCCTTGTTCACTTAGGAAAATGTATGCATTCACATCTG
ACATCAAATAAAGCAGTTTGGACAAGCAAGGCCTGTCTCCTTTATGAAGG
ATCTTCAAACAGGTTTGCAAGGGGAAGCCTTTATCATAAAGAGCCAAGTC
TAAATCTGGAGAAGGCCTCTCTTCCAGCTCCTCTGTATTCTCTGCACTCA
CTCAAAACCAAATATATTCCTGCCTCCGCTCTTTTAGAGTTTCATGCATT
TAACAAATTGTATCTTACATCTTGGGTATCCTAAGTTTTGGGCTAATAAA
GACCAAAGTGTGGACACTGTGCCCCTTCTTAGAATTGGGAACAAAACACC
CATGGGAGGAGTTACAGAGACAAAGTTTGGAGCTGTGACAAAAGGATGGA
CCATCTAGAGACTGCCATATCCAGGGATTCACCCCATAATCAGCTTCCAA
ACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGA
TATAGCTGTCTCTTGTGAGACTATACCGGGGCCTAGCAAACACAGAAGTG
GATGATCACAGTCAGCTATTGGATGGATCACAGGGTTCTCAATGGAGGAG
CTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_l18.b1 MSMg01no266_l18.b1 CHROMAT_FILE:
MSMg01no266_l18.b1 PHD_FILE: MSMg01no266_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:36 2005
         (320 letters)



>mm_chr1_109601385_109602104
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgttctttcaccgaaggtagaacctcctgtcatagtttaattctgagttgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcaatgttctttcaccgaaggtagaacctcctgtcatagtttaattctgagttgta 461

                                                                       
Query: 65  ccatgaagttgctaaaccaccaagaaggcagaagatgtaaacgcttgaaaatagctgtac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ccatgaagttgctaaaccaccaagaaggcagaagatgtaaacgcttgaaaatagctgtac 401

                                                                       
Query: 125 ttagggtttcttctttacaactaacatcaggaccctgagaagactagcctatagcagtta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttagggtttcttctttacaactaacatcaggaccctgagaagactagcctatagcagtta 341

                                                                       
Query: 185 agagactcacagatgagactccttaacaaaatgctccacagacacacaagctgcagctta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agagactcacagatgagactccttaacaaaatgctccacagacacacaagctgcagctta 281

                                                                       
Query: 245 catcaggtatctaagtgagcaaagtcaacagccatgaagcagggacagccccttcagcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 catcaggtatctaagtgagcaaagtcaacagccatgaagcagggacagccccttcagcct 221

                           
Query: 305 gggtagaatgaatcct 320
           ||||||||||||||||
Sbjct: 220 gggtagaatgaatcct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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