BAC Information

Click to search

BAC

Clone NameMSMg01-267B10
Chromosome1 (Build37)
Map Location 56,571,586 - 56,571,840
singlet/doubletsinglet
Overlap genenone
Upstream gene9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267B10.T7 (MSMg01no267_b10.b1)MSMg01-267B10.TJ (MSMg01no267_b10.g1)
ACCAG407905AG407906
length731715
length of high quality
(start - end)
317 (45 - 361)254 (438 - 691)
definitionCHROMAT_FILE: MSMg01no267_b10.b1 PHD_FILE: MSMg01no267_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:03 2005CHROMAT_FILE: MSMg01no267_b10.g1 PHD_FILE: MSMg01no267_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTGCTAAAGTCATTTTTTCTTGAAGGTTTTGTTTTTGTTTTTGTT
TTTTGACTGAGAAACTTTTTATTACTGCTTCTCTTTTACCAGGAGTTATA
GGTCTGTTTAACTTGTTTGTTAGTTTTTTTTTTTAATCTTGATTTTAACT
TTGGTAAGTGAACTATAGCAAGAAAAATTTCCATTTATTTTAGATTTTCC
AATTTGGTAGAGTACAAGATTTTTAAAAATGTCCTTATGAATATCTGGAT
TTACTTGGTATCTATTATTATGTCCCCCTTTTTTATTGCTAAGTTTGTTA
ATTTGGATACTCNCTTTCNTTCTGNNTCTAGNCCCTTTGAATAAGGTTTG
TCAATATTATTGATTTGCTTTTAAAAAACACAAAGAGTTTCACTGATTCT
TTTTATTATTTTTCTTTTGTTTCGGTTTTATTGATTTAAGTCCTGAGTTT
GATTATTTTCTGCCATATCTTCCTTTTTGGCGTGATTTCTTCTTCTATTT
TTGAGCTTTCAGGTGTACTATGAAGTTACTAGATCTCTCCGTCTATTTAT
TCATCTATTTGTTTGTGATTTACTATATCCACTTAGCACTGTGAACTTGC
CTTATCACCACCTTCATAGTGCCCATAAACTTACTCATGTTAGGTATTCC
CTTTCATTCCCTCATAGCAAGTCTTTTGTTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTATTCCCGAAATTCCCAAGACACTGAGTGATGGACACTG
GGGCTAGGTTAAATGCTATCTGCCTATTTTATGGCTACATGTGGTCAAAG
CTGCATTAAAGCAGTGATTGCCACAGTAGCTAGAGTGAATGGCATGGCTG
AGTGGATGGATCTAATGGTATGTAAAATGTCCAGTGTTGCGTGTATTACA
TTGTGTCCAGTGTATTTTGGTATTAGTGTCTCTGCACTTTGGTTTCTATC
TATGCTTCCTCTACTTTCATCTACCATGATTAATTCTCTCCATCTCTAAT
ATTTATTAAAGTTATTTTTAGACACCTCCCTCTACAGCATGGTGCAACCC
TCAGAAGAGTCATGTATGGGCTGTATTTAGAATCTGCCTTGTCATTTTTG
CAGTAAGTTGGAATGGTAAGGGGAAGTGTATGTGACAAGATAGCCTATTA
GCATGCTGCTACCTGATGGGTAAGACAGGTTTCCTTTCTTAGTGCATCAA
GTACCAGTTCTGATGACTTACATGTGCTCTTCTGTATATTAGTTGCTGTA
TTTGGGGTAACAACCACATATTTTGTTTTGAGAATGAGAGGAGACATAGA
AATACATTTCCTGTATTTGCTAATTGCTTGTCTTCTCTGTTGATTTGTGT
ATTTATGTTTCGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_b10.g1 MSMg01no267_b10.g1 CHROMAT_FILE:
MSMg01no267_b10.g1 PHD_FILE: MSMg01no267_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:03 2005
         (254 letters)



>mm_chr1_56571386_56572040
          Length = 655

 Score =  478 bits (247), Expect = e-139
 Identities = 253/255 (99%), Gaps = 1/255 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgtcatttttgcagtaagttggaatggtaaggggaagtgtatgtgacaagatagccta 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 455 cttgtcatttttgcagtaagttggaatggtaaggggaagcgtatgtgacaagatagccta 396

                                                                       
Query: 61  ttagcatgctgctacct-gatgggtaagacaggtttcctttcttagtgcatcaagtacca 119
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttagcatgctgctacctggatgggtaagacaggtttcctttcttagtgcatcaagtacca 336

                                                                       
Query: 120 gttctgatgacttacatgtgctcttctgtatattagttgctgtatttggggtaacaacca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gttctgatgacttacatgtgctcttctgtatattagttgctgtatttggggtaacaacca 276

                                                                       
Query: 180 catattttgttttgagaatgagaggagacatagaaatacatttcctgtatttgctaattg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 catattttgttttgagaatgagaggagacatagaaatacatttcctgtatttgctaattg 216

                          
Query: 240 cttgtcttctctgtt 254
           |||||||||||||||
Sbjct: 215 cttgtcttctctgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 655
Length adjustment: 9
Effective length of query: 245
Effective length of database: 646
Effective search space:   158270
Effective search space used:   158270
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)