BAC Information

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BAC

Clone NameMSMg01-267H03
Chromosome1 (Build37)
Map Location 76,072,175 - 76,072,482
singlet/doubletsinglet
Overlap genenone
Upstream geneNhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream geneLOC100039137, Tfdp1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267H03.T7 (MSMg01no267_h03.b1)MSMg01-267H03.TJ (MSMg01no267_h03.g1)
ACCAG408164AG408165
length748733
length of high quality
(start - end)
314 (45 - 358)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no267_h03.b1 PHD_FILE: MSMg01no267_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:31 2005CHROMAT_FILE: MSMg01no267_h03.g1 PHD_FILE: MSMg01no267_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTGCAATTTTTTTTTTAATTCCAATACAGCATATGCTCAGCTCT
GCACTGTTCACAGACTTAACATCTTGTCACTCTGCTGGGAAGTTACTCTC
CCCCTGCCATTATACAGCTTCTTTCATGCTCCACAACTTCACTTTACATT
ATCTTTTTCTAGACAACAACATTCTCAGAGGTTTTCCTGAGTTAAGTAAC
ACAATTACACAGGAATAGCTGCAGGATGTGTCCGGACTGGAACACAATGA
TCGTGCTGTGGGAAACAAGGATGCCATTATTTTTGCTGTCTTACTTAATT
AGTATTATTTCATCACGTACCTGNGCCTGCCCCATACCCAGTTTATTGGG
GAGAAACACTATGAGGCACAAAGAATAAAAGTAGATATTGAAAAAAAAAG
ACTTGGTGGTGATGGGGGGAGCGGTGATGCATATACTTTTACTTCTACCC
CCTCTTCAAATTTTTCTTTCGCACTCTCTTCTTTCATCAACCCCCCTCGA
ACCCTCCTATTCCTTTAATTTCCTTCCTCACCCCCTCTCTCTAAATTTTC
ATACTCCTCCCCTTCACTCCCCCCACACCTCTCTTCTCTAATCTTATTAC
TTCTTTTTATTTCCTCACCTCTCCTTCAACACTTATCTTTTTCTTTTACC
TCCTCCTCTTTTTCCTCTACCCCCCCCATTTTTTTTTCACTAATCCAT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGAGACAAAGTTCAGAGCTG
AGACAGAAGGAAGGACCATCTAGACCCCGCCCTACCCGGACAGGGGAATG
CCAGGGCCAGGATTCATCCCATATACAACCACCAAATCCAGACACTATTG
CATATGCCAGAAAGATTTTGCTGACAGGACCCTGATATAGCTCTCTCTTG
TGAGGCTATGCCAGTGCCTGGCAAATACAAAAGTGGATGCTCACAGTCAT
CTATTGGATGGAACACAGGGACCCTAATGAAGGAGCTAGAGAAAGTACCC
AAGGAGCTAAAGTGGNCTGCATCCCCCAGCAGGCCCAACAATATGAACTA
ACCAGTACCATCCACAGTTTTGTGTCAAAAAAAAAAAAAAACAGAGGATG
GCCTAGTTGGCCATCAATGGGAGGAGAGGCCCTTGGTCTTGTGAAGATTA
TATGCCCCAGTACAGGGGAATGCCAGGGCCAGGAAGCTGGAGTGGGTGGG
TTGGGGAGCATGGCGAGGGGGGCGAGGTATAGGGGTTTTGTTCCCTTCTC
TTTTTCCGTTCCTTTTCTTTCCCCCCGCTTCCTCTTTTTTCCTCTCGCCT
TTTTCTTCTTTTTTTTCCCCCCCCTCCTTTTCCGCTTTCCCCTCTTTCCC
CTCCTTCCTCCTTCCTCTTATCCCAACTATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_h03.b1 MSMg01no267_h03.b1 CHROMAT_FILE:
MSMg01no267_h03.b1 PHD_FILE: MSMg01no267_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:31 2005
         (314 letters)



>mm_chr1_76071971_76072683
          Length = 713

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%), Gaps = 1/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctgcaattttttttttaattccaatacagcatatgctcagctctgcactgtt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctgca-ttttttttttaattccaatacagcatatgctcagctctgcactgtt 263

                                                                       
Query: 65  cacagacttaacatcttgtcactctgctgggaagttactctccccctgccattatacagc 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacagacttaacatcttatcactctgctgggaagttactctccccctgccattatacagc 323

                                                                       
Query: 125 ttctttcatgctccacaacttcactttacattatctttttctagacaacaacattctcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctttcatgctccacaacttcactttacattatctttttctagacaacaacattctcag 383

                                                                       
Query: 185 aggttttcctgagttaagtaacacaattacacaggaatagctgcaggatgtgtccggact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggttttcctgagttaagtaacacaattacacaggaatagctgcaggatgtgtccggact 443

                                                                       
Query: 245 ggaacacaatgatcgtgctgtgggaaacaaggatgccattatttttgctgtcttacttaa 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 ggaacacaatgatcgtgctgtgggaaacaaggaggccattatttttgctgtcttacttaa 503

                    
Query: 305 ttagtatta 313
           |||||||||
Sbjct: 504 ttagtatta 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 713
Length adjustment: 9
Effective length of query: 305
Effective length of database: 704
Effective search space:   214720
Effective search space used:   214720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)