TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGATCAACATCCTGGAGCCAAGAGCTGGACCAGAGATACAGCA
ATAGTAGGGAGAATATGAACGATTTATGAAGAAAGAAAAGGAGATTACTG
AGAATGGAAGCTGTCCTGAGAACCAGGAAAGGTCTGAGTCTTAAAGGGCC
AGTGTGATGAGAGTCATTGAACATGAAGTCCTGGTGTTTGGAGGGAAACT
GATTGCTGTTTTATTCTGTTTTGCTTCTCTGTTCTTGCTGTGTTGTCCCA
TTCAGCCCACCATCAGAGGGGTTTCTGGTGTCACTGGTCATTCTCCTGTT
TCAGTCTTCATGCCTCTTGCTTCTGCCCCCTCCCGCCCTGTTTTCCTATC
TCAAAATCTTCATCAGGGCCTAGAATTAAAGAGGAGAGTCGTGGTACCTC
ATTCCTTCACAAGAGACACATTCAGAAAAATTTGCAAACATGTTTGACAA
AAAAACCTTCAAGCGAGGCTGAGTAGCACTGAGATACCACCAAGTGCTGG
CATTTGTTACTAGTCGCCCTTTGCTTTGCCTAAATTACCATTTTCATGCA
GCTCACTTCATTCTGGACGCCAGCAGCAAATATTCTAGCAGGCTTACCTT
GCCACTCTGTCCTGAAATGTGATTGCTTGTCTGTTTTCTGGTTGAGGTCA
TCCAAAAATATCTTCTGAATTATATAGACATATN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGGTAGGTCCAGCACTGTGC
TGAGTTATTCTTTAGTGGTAGGGCCTGCGGAAAGCTTTCCTCCACTCTGG
GTCTCAATTTCTAAAACACAGAGCATTATCTCCTTCGTGGTTTGAAAGTG
AAATGTCTCCCTTAGGCTCATAGGTTTCAACACCTGGCTCCCAGCTGGGG
ATGCTATTTGGGAAGGTTGCGAAGAGGCAGAGCCTACCCAGAAGAAATGG
GTCATGGGAAATGACCTCTGATCTCCCAGCTCTTCTTTTCTCCCACATTC
TGCTTCCTGGGTGAGGCTGTAGTTAGACCAGGCACCGCCTCCTCTTAGCA
TCATAGTTTCCCACCATGTAGAAGCAATGGTTGTCCTGGAACTCTATGTA
GATCAGGTTGGCTTTGAACTCACAGATATCTGCCTGTCTCTGCCCGCCAA
GAGCTGAGGTAAAAGGTGTGCTCCTCCACATATAGCTGAAGATTAGTTTT
CCACTGTCAACTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTAC
ACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCT
AGGCAAATGGATGGACTGGAGGGCATCATCCTGAGTGAGGTAACACAATC
ACAAAAGAACTCAAATGATATGTACTCACTGAT

Query= MSMg01no267_k02.b1 MSMg01no267_k02.b1 CHROMAT_FILE:
MSMg01no267_k02.b1 PHD_FILE: MSMg01no267_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:44 2005
         (317 letters)



>mm_chr1_123237459_123238175
          Length = 717

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagatcaacatcctggagccaagagctggaccagagatacagcaatagtaggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagatcaacatcctggagccaagagctggaccagagatacagcaatagtaggg 264

                                                                       
Query: 65  agaatatgaacgatttatgaagaaagaaaaggagattactgagaatggaagctgtcctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaatatgaacgatttatgaagaaagaaaaggagattactgagaatggaagctgtcctga 324

                                                                       
Query: 125 gaaccaggaaaggtctgagtcttaaagggccagtgtgatgagagtcattgaacatgaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaccaggaaaggtctgagtcttaaagggccagtgtgatgagagtcattgaacatgaagt 384

                                                                       
Query: 185 cctggtgtttggagggaaactgattgctgttttattctgttttgcttctctgttcttgct 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctggtgtttggagggaacctgattgctgttttattctgttttgcttctctgttcttgct 444

                                                                       
Query: 245 gtgttgtcccattcagcccaccatcagaggggtttctggtgtcactggtcattctcctgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgttgtcccattcagcccaccatcagaggggtttctggtgtcactggtcattctcctgt 504

                        
Query: 305 ttcagtcttcatg 317
           |||||||||||||
Sbjct: 505 ttcagtcttcatg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no267_k02.g1 MSMg01no267_k02.g1 CHROMAT_FILE:
MSMg01no267_k02.g1 PHD_FILE: MSMg01no267_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:44 2005
         (336 letters)



>mm_chr1_123421249_123421984
          Length = 736

 Score =  557 bits (288), Expect = e-163
 Identities = 300/304 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cggtaggtccagcactgtgctgagttattctttagtggtagggcctgcggaaagctttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 304 cggtaggtccagcactgtgctgagttattctttagtggtagggcctgtggaaagctttcc 245

                                                                       
Query: 61  tccactctgggtctcaatttctaaaacacagagcattatctccttcgtggtttgaaagtg 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tccactctgggtctcaacttctaaaacacagagcattatctccttcgtggtttgaaagtg 185

                                                                       
Query: 121 aaatgtctcccttaggctcataggtttcaacacctggctcccagctggggatgctatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aaatgtctcccttaggctcataggtttcaacacctggctcccagctggggatgctatttg 125

                                                                       
Query: 181 ggaaggttgcgaagaggcagagcctacccagaagaaatgggtcatgggaaatgacctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ggaaggttgcgaagaggcagagcctacccagaagaaatgggtcatgggaaatgacctctg 65

                                                                       
Query: 241 atctcccagctcttcttttctcccacattctgcttcctgggtgaggctgtagttagacca 300
           |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 64  atctcccagctcttcttttctcccacattctgcttcctggctgaggctgcagttagacca 5

               
Query: 301 ggca 304
           ||||
Sbjct: 4   ggca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)