BAC Information

Click to search

BAC

Clone NameMSMg01-267K12
Chromosome1 (Build37)
Map Location 41,966,319 - 41,966,532
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3, Mrps9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267K12.T7 (MSMg01no267_k12.b1)MSMg01-267K12.TJ (MSMg01no267_k12.g1)
ACCAG408314AG408315
length732710
length of high quality
(start - end)
314 (46 - 359)214 (423 - 636)
definitionCHROMAT_FILE: MSMg01no267_k12.b1 PHD_FILE: MSMg01no267_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:46 2005CHROMAT_FILE: MSMg01no267_k12.g1 PHD_FILE: MSMg01no267_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTAAAAATGTTGCTATTCACTGACATTCAGAATAGCCTCTGGTA
CTACACTATTACTTTGAGTAAAAGCTAGATCACTGCCCTTCACAGGAATC
TACCATCACCAAGGAAGAAGGAAGTTTCTGACCGAAGGAGAAACCAGAAT
AGATACTTAGAACTATAGCTGAGTTACACCCATATACAGGAATTTACAAT
GGTTTAGGAAGTAGATCGGGCTGTGGTTTTAGAGTATTGCATTATTCATG
GGATGGTTAGCTAGAATGGAACTCCCTAGTTAGAACCATGACTTGGGTCT
GAAAGCCCTTGCTCAGTACCCAAAACATNCCACACCTGGCTTCCAAGACT
ATAGCTGACCTTAGATAGGGCTGACAAAAAAATCAGTTATTTTTATTGCC
CAGTTCCTTCCGATCTTTGCGTTTTCATTCCTCTGTTCTGTGTAAAAGTC
ATTAAGCATCGGGTTACCTCATTTGTACCTTGCGGGTATGTCACCCAACT
CCATTATTGTCTTCTGTATAAAAAGTCTGATGCTCGATTTGACAAAATAC
ATTCAGATTCTACACAACCTCTCCTGTGTGCTTCTGTCTGTCAATTCACC
CGATGCTTTGCCCATCCACGACTAGAGACCCGGTCCACGCAGACAAAGGG
GACCAGAGGGTGTGCAGCACTTGTGTGTATGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCA
AAAACAACTCCCTCCCTTAATATTTTGTTCTAAATCTTTTCTTTGATTGC
TTGAACCCCTTGCCAAGCCTCCTTACAAAGCATAAATAGAGAAATAGCAT
AAATAACCAATGGTGCCTGTAATCTAGGTACACAGGAGTTTAAGACAGGA
GGATTACCTTAACTGTCTGTCCAGTCTAGGCTAAATATAGGTCTTTAGGT
CAGCCTATATCTATGAAAACAAAATTTTTGATATGTAATTCTCCAATTAA
TATATTTATTGGCAACAATAAGTAAGACTTCTACTCTGAATGATTTTTGT
TTTTACCCCCCTCCCCCCTTTATGTGATTATATTTCAGACATAACTTCTT
CCTTTTTGTGAGACTATATTATAGACATAAATGTAGCAATCATGTTCAAA
AGTAGAATCAGGTATCTACACACCCCTGCTAAGGAATGTATAGAGAGCAT
ATATATCTGAGTGTATGTTAAATTGCTAAATAATTTATGATGTTCATTTG
AACTTCAATATTTGTGTTAGAACACAATGAAGACCATTGACTTAACCAAT
CTGACCTAAAGAGTTAGCTCATTTATAACTTTAAGTCTCATTCAAAAGAA
ATCAGAAAATATTTTAAGTTCATATTTACTCCCAAAACTTAAAGCTTATG
AATTCAGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_k12.g1 MSMg01no267_k12.g1 CHROMAT_FILE:
MSMg01no267_k12.g1 PHD_FILE: MSMg01no267_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:46 2005
         (214 letters)



>mm_chr1_41966119_41966732
          Length = 614

 Score =  414 bits (214), Expect = e-120
 Identities = 214/214 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacataaatgtagcaatcatgttcaaaagtagaatcaggtatctacacacccctgctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacataaatgtagcaatcatgttcaaaagtagaatcaggtatctacacacccctgctaa 260

                                                                       
Query: 61  ggaatgtatagagagcatatatatctgagtgtatgttaaattgctaaataatttatgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaatgtatagagagcatatatatctgagtgtatgttaaattgctaaataatttatgatg 320

                                                                       
Query: 121 ttcatttgaacttcaatatttgtgttagaacacaatgaagaccattgacttaaccaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatttgaacttcaatatttgtgttagaacacaatgaagaccattgacttaaccaatct 380

                                             
Query: 181 gacctaaagagttagctcatttataactttaagt 214
           ||||||||||||||||||||||||||||||||||
Sbjct: 381 gacctaaagagttagctcatttataactttaagt 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)