BAC Information

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BAC

Clone NameMSMg01-267P12
Chromosome1 (Build37)
Map Location 15,393,039 - 15,393,379
singlet/doubletsinglet
Overlap geneKcnb2
Upstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267P12.T7 (MSMg01no267_p12.b1)MSMg01-267P12.TJ (MSMg01no267_p12.g1)
ACCAG408542AG408543
length733735
length of high quality
(start - end)
314 (45 - 358)341 (387 - 727)
definitionCHROMAT_FILE: MSMg01no267_p12.b1 PHD_FILE: MSMg01no267_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:09 2005CHROMAT_FILE: MSMg01no267_p12.g1 PHD_FILE: MSMg01no267_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTGAATACACATGTGGGAGCATCATCAGTTTTAATTTGAAGAGA
TATCTCCAAGATAACCACCATCTCTAATAAACGTGCAATCTCAGAATCAT
TCTTTTCAGAGCTTACAGCAGAAGCCCCTTGGAATTCTGAGTATTCGTCA
ACTGTAGATGCATTAACACATGTGCATGTTTAAAATTTTCAAACTCTAAA
AGATAAAACCCATAAGGTGTTCTCTGACATTGCTCTACGTTGGCATCGGA
CATGGTGTGCACTCTTTACTCTTCATATTCTGCCATTCTAAGTCTTGAAC
TCTTTGGTTANTTCCNCTTCCCGAGCTANCCTTTGGTTGGCATTGTAGGT
TCCAGATGGATTCTTATGAAGGAACTAGAATCTGATTTAAAGAATTCTCT
CATCTCTGTTCTATAGCCTCTAATCTAGCATTTAACTTTTGAGTCTTCCC
TAAATATCTTTTTCTGATCTCTCTTAAAGAGAATATATAAAATTGTGGTA
ATTTTTGAACATTTAATTATTTGTACACTGTCTAAACAAAACCATATGGG
GCTCAAACGTCCTTTTGTACAGTGTTTTCCACTGTTTTAACCTGGAAAGT
ATTTTCTTTTTAAATCTCCCTATTTCTCTTTGTTCTTTGGAGCCTTTTAT
TCTCTCCTTTCTTTGAAGATATTGTCTTCTATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATTCCTATGAAGAGAGAAATCG
ATAAACAAAATAAATAATGCTCAACGGAGTATCACTTGCTTTTAAAGTTC
CATAAAGAGAAATATAAGTAGAATACAAGAATCCAAAGTAAAAAGGGAGC
AGAGGAAGGTATTGCATTCAGGGAAGAAAGGATAGCCTCTCTGAGAAATC
ATTATTTGAGAAGAAACTGAGATAGAATAAAGAAGAGACATGTCTGTCAA
ATTAAGAAGATACAGGGATAAAACTATGTACCTGAAAGCCATTGGGCAAC
ATTATGTATCCATATCTGCTGCCACACGATCTGCCAAACATTCTGACAAC
CTAGAATATTGTAATGTGAACATATGTAGAGTAAGGGATTTTGTGGGTGG
TATTAAATTAAGCTCTTTAATATAAGATTATCTGGAATGATGTGTGCATT
AAATTCAATGAAAAGTGCTTAGAGAAAACATGGGAAACAGAGAGAAGGGT
GGAGGAATTGTGAACAAAAAGGCATAGACAGGAGTTAGAACCAAAGAACA
CCAAGAATTGTTAACAGTCACTGTAAGCTAAGAGAAGATATGGATGCATT
CTCATTGTCCCTAGATGGAGTTGATCCTGGGTCTTCCTTGACTTCAAACT
TCTTCTCTTCACATCTATGAGAGAATGAATTTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_p12.g1 MSMg01no267_p12.g1 CHROMAT_FILE:
MSMg01no267_p12.g1 PHD_FILE: MSMg01no267_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:09 2005
         (341 letters)



>mm_chr1_15392839_15393579
          Length = 741

 Score =  652 bits (337), Expect = 0.0
 Identities = 340/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacattctgacaacctagaatattgtaatgtgaacatatgtagagtaagggattttgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aacattctgacaacctagaatattgtaatgtgaacatatgtagagtaagggattttgtgg 482

                                                                       
Query: 61  gtggtattaaattaagctctttaatataagattatctggaatgatgtgtgcattaaattc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 481 gtggtattaaattaagctctttaatataaaattatctggaatgatgtgtgcattaaattc 422

                                                                       
Query: 121 aatgaaaagtgcttagagaaaacatgggaaacagagagaagggtggaggaattgtgaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatgaaaagtgcttagagaaaacatgggaaacagagagaagggtggaggaattgtgaaca 362

                                                                       
Query: 181 aaaaggcatagacaggagttagaaccaaagaacaccaagaattgttaacagtcactgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaaggcatagacaggagttagaaccaaagaacaccaagaattgttaacagtcactgtaa 302

                                                                       
Query: 241 gctaagagaagatatggatgcattctcattgtccctagatggagttgatcctgggtcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gctaagagaagatatggatgcattctcattgtccctagatggagttgatcctgggtcttc 242

                                                    
Query: 301 cttgacttcaaacttcttctcttcacatctatgagagaatg 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttgacttcaaacttcttctcttcacatctatgagagaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)