BAC Information

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BAC

Clone NameMSMg01-268E23
Chromosome1 (Build37)
Map Location 39,670,480 - 39,670,788
singlet/doubletsinglet
Overlap genenone
Upstream geneAff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126
Downstream geneCreg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268E23.T7 (MSMg01no268_e23.b1)MSMg01-268E23.TJ (MSMg01no268_e23.g1)
ACCAG408784AG408785
length744740
length of high quality
(start - end)
322 (46 - 367)305 (74 - 378)
definitionCHROMAT_FILE: MSMg01no268_e23.b1 PHD_FILE: MSMg01no268_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:34 2005CHROMAT_FILE: MSMg01no268_e23.g1 PHD_FILE: MSMg01no268_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCTGTGCTTGCTGACTGTGGACACCACAGGACCAGCTACCATAA
ACCAGTATTTGCAGGACTTCCCCACCACAAAGGATGGTTACCTTAAACTG
TGAGGAAAACCCAAACCTTCCTTCCTTAAGCTGGTTTTGTGTTTTATCAC
AGCAATACAAGTAACTGATATATCGGGCACACAGAGAAGCAAGAAAATAC
GGCCCACAGAGAATAGTCAATAAGTAAATGGAAACCTATGTAGAAGTGGC
AACGAGAACTTACAGAACCGGAAGTCACGTGTAGTTCTCTTTCCTTTTGC
GGCCATCGGTGGATCTTTTTTTCAAAATCGACCCCAATCCCTTCGTGACT
TCTGACCGAAGTAAGAACCGCAAACGGCATTTCAATAGCGCCCTCTCACA
TTCGGAGGAAGATCATGTCTTCCCCTCTTTCCAAAGAGCTGAGACAGAAG
TATAACGTTCGGTCTATGCCCATTCGGAAGGATGACGAAGTTCAGGTTGT
TCGTGGACACTACAAAGGCCAGCAGATTGGCAAGGTGGTCCAAGTGTACA
GGAAGAAGTACGTCATCTACATCGAACGAGTCCAGCGAGAGAAGGCTAAT
GGCACAACCGTCCACGTGGGCATCCACCCCAGCAAGGTCGTTATCACCAG
GCTAAAGCTGGACNAGGACCGCAAGAAGATCCTGGAGAGGAAAG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGTCCTAGCAGCCTTTGGGGGCAGTT
CACAACTGCTTGTAATTCCAGCTCCAGGGGATCTGGTGCCCGATTCTGGC
CTCTGTGGGTGCTGCACTCACATGTACAACACTACATTTAGACACACACA
CAACTTCAAAATAAATTCTAAAATAAAAAGATCTAGATGATGTTACTTTT
AGTTTAAAGATCTTGACTGCCTCATTTGTGTTTCTGGAATCCGATGGCTC
TTAGTTCTATCAGATGCAGTAAGTTTTCCTGGAACCAAGTACTGAAGGCT
TACTTTATAGACAGCTTAATGATGAACACCACACAAACAAGAAAGGACTT
TGCGGGCTCACGCTATTCCTCTTGGAAGGCTGCGACAGGAGGATGGACCA
AGAGGATGAGATTAGGTTACCTCTGGTTTCTTTGTGTGAGTGTGAGCCCC
TTGGCAGAGGCAGAAGGAAGTTAAGAATCACAACTGAAACAGGTTTGGGA
AATTTGAGCATTAACCTTTTCTCCTGGTTTCTCAGAAAAATGGAGAANAA
CTCCCTTTTGCCTTACTGAAGGGAAGTGTGGCCAGTGCGCTGGCCTTGCG
TGCACTGGCCTTGCCTGTTTGTGGCAGTCACTGCGGTCCCTCTGCTAGGC
CCTTGAGAGAAATGCTTTCTCTGNATTCCGTGGCAATGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_e23.g1 MSMg01no268_e23.g1 CHROMAT_FILE:
MSMg01no268_e23.g1 PHD_FILE: MSMg01no268_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:34 2005
         (305 letters)



>mm_chr1_39670286_39670990
          Length = 705

 Score =  551 bits (285), Expect = e-161
 Identities = 301/311 (96%), Gaps = 10/311 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtcctagcagcctttgggggcagttcacaactgcttgtaattccagctccaggggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tggtcctagcagcctttgggggcagttcacaactgcttgtaattccagctccaggggatc 254

                                                                       
Query: 61  tggtgcccgattctggcctctgtgggtgctgcactcacatgtacaacactacatttagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tggtgcccgattctggcctctgtgggtgctgcactcacatgtacaacactacatttagac 314

                                                                       
Query: 121 acacacaca------acttcaaaataaattctaaaataaaaagatctagatgatgttact 174
           |||||||||      |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 acacacacacacacaacttcaaaataaattctaaaataaaaagatctagatgatgttact 374

                                                                       
Query: 175 tttagtttaaagatcttgactgcctcatttgtgtttctggaatccgatggctcttagttc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tttagtttaaagatcttgactgcctcatttgtgtttctggaatccgatggctcttagttc 434

                                                                       
Query: 235 tatcagatgcagtaagttttcctggaaccaagtactgaaggcttactttatagacagctt 294
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 435 tatcagatgcagtaagttttcctggaaccaagtactgaaggcttactttatagacag--t 492

                      
Query: 295 aa--tgatgaa 303
           ||  |||||||
Sbjct: 493 aaaatgatgaa 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)