BAC Information

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BAC

Clone NameMSMg01-268J10
Chromosome1 (Build37)
Map Location 14,914,924 - 14,915,212
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039869, Eya1, LOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1
Downstream geneEG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268J10.T7 (MSMg01no268_j10.b1)MSMg01-268J10.TJ (MSMg01no268_j10.g1)
ACCAG408963AG408964
length712708
length of high quality
(start - end)
219 (127 - 345)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no268_j10.b1 PHD_FILE: MSMg01no268_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:54 2005CHROMAT_FILE: MSMg01no268_j10.g1 PHD_FILE: MSMg01no268_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCGGTCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAATCCATCTG
ATCCTGGGTTTTTTGTTTTTGCCCGGTGGGGTGGAGACTATTGATGACTG
CTTCTATTTCTTTAGGGGATATAGGACTGTTGAGATCATTAATCTGATCC
TGATTTAACTTTGGTACCTGGTATCTGTCTAGAAAATTGTTCATTTCATC
CAGATTTTCCAATTTTGTTGAGTATAGGTTTTTGTAGTAGGATATGATAT
TTTTTTGGATTTCCTCATATTCTTTTGTTATGTCTCCTTTTTCATTTATG
AANTTGTTTANTTGGATTCCCCCCCCCCCCCCTCTAGTTATTTTGGTTAA
GGGTTTATCTATCTTGTTCCAAAAAAAAAAAAAAAATCTCCGGGGTGGGG
TGGTTCATTGTATAATTCTTCTTGTTTCCACTTCAGCCCTGAATTCGATT
ATTTCCTCCCTCCTTATTCTCTTGCCCGAATTTGCCTATTTTTGCTTTAG
ATCTATTATTTATACTGTCCTGCCGCCTTTTGTATGTTTCTCTCTATTCT
CTTTTTGCCTACTGATACCCTTGATTTCGTCCTCATAAGACTGCGCCTTT
TTTTCTTTATCTCCTGCGTTCTGTTTTTCTTTTTTTATTCTTTTACCTCT
ATATACGTTCTT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTATGAGAGCTCTGTGTTTTATT
TCAGGGGGGATATTTCATTATCACTGTTGTGTCTTGAACCTTCTCCAGTG
GGGTCCAGTTTTGAACTGGTTTATGTCTGTGGTGCTGATTTCAAAGGTTG
TTCCCCTTCAGTACTATATTGTGGGAGAGATCCTTGCTGGAGGAAGTGAG
TCACTCGGTGTGGTGTGTGGGGGCCTTGAGGTTTTAGAAGACTCACAGAA
TGTGCCTAGAGGACACGCCTCTTGAGGGCTCATAACCCAGCTGCACTTCC
TGTCTGTTCCTGTTTCATGACTGCACACCCCCTGTGACTAGCCCCAGACC
AAGCTTCTGTTGCTGCACTTTCCCAATGATACCATGTCCACTCAAAATAA
ACATGTCCTCCTTTGCCTCTTGTCCGGCATTTGGCCACAATAGTAAGAGA
AGTCATTTTTACAATCACAACTTCAATTTCCTTAACTTTTATAGAGTTAG
TTTGATTTATGTTGGTGTAAATTTTGCTAATATATGTTGTTTGAGAATTT
TGTCTATTTGTTGACATCAACTTCTACCCAGAAATCCCAAGAATCTATGT
TCTGTAATAATGTCTCTAGTTATATTTCTTTTAAAACTAATTTGTATCCT
CTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_j10.g1 MSMg01no268_j10.g1 CHROMAT_FILE:
MSMg01no268_j10.g1 PHD_FILE: MSMg01no268_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:54 2005
         (287 letters)



>mm_chr1_14914724_14915413
          Length = 690

 Score =  520 bits (269), Expect = e-152
 Identities = 283/289 (97%), Gaps = 3/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatgagagctctgtgttttatttcaggggggatatttcattatcactgttgtgtcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtatgagagctctgtgttttatttcaggggggatatttcattatcactgttgtgtcttg 260

                                                                       
Query: 61  aaccttctccagtggggtccagttttgaac---tggtttatgtctgtggtgctgatttca 117
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 261 aaccttctccagtggggtccagttttgaacagttggtttatgtctgtggtgctgatttca 320

                                                                       
Query: 118 aaggttgttccccttcagtactatattgtgggagagatccttgctggaggaagtgagtca 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggttgttccccttcagtactatattgtgggagagatccttgctggaggaagtgagtca 380

                                                                       
Query: 178 ctcggtgtggtgtgtgggggccttgaggttttagaagactcacagaatgtgcctagagga 237
           ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ctcggtgtggtatgtgggggccttgaggttttataagactcacagaatgtgcctagagga 440

                                                            
Query: 238 cacgcctcttgagggctcataacccagctgcacttcctgtctgttcctg 286
           ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacccctcttgagggctcataacccagctgcacttcctgtctgttcctg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 690
Length adjustment: 9
Effective length of query: 278
Effective length of database: 681
Effective search space:   189318
Effective search space used:   189318
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)