BAC Information

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BAC

Clone NameMSMg01-269D01
Chromosome1 (Build37)
Map Location 158,526,907 - 158,672,674
singlet/doubletdoublet
Overlap geneAbl2, Tor3a, C530043G21Rik
Upstream geneAcbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026
Downstream geneLOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269D01.T7 (MSMg01no269_d01.b1)MSMg01-269D01.TJ (MSMg01no269_d01.g1)
ACCAG409386AG409387
length734724
length of high quality
(start - end)		640 (40 - 679)610 (71 - 680)
definitionCHROMAT_FILE: MSMg01no269_d01.b1 PHD_FILE: MSMg01no269_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:35 2005CHROMAT_FILE: MSMg01no269_d01.g1 PHD_FILE: MSMg01no269_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,526,907 - 158,527,542)(158,672,067 - 158,672,674)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACCAGTTCCAAAGCTGTTTGTGGTTCCTCTAGTTCAAATCTCGACACTTG
AACTCATGGTCCTCAATGCCTCAGACTCTTGGATGCTGGGATTGCAGATG
TTTGCCACCGTGCCTGGCTCTTGGGAAATACTATGGTGATCAGTAGGAGT
ATCTGTGACCAATAGAGGTTAGAGTTGGGGTTTTTAACAATGATTTTATT
ATTTCTCAGAAGAGTTTTCTGGTTCTAGGAAAAGAATTTCTTGCTGTTTC
ACGGGGTGTTTTACCAACTTGTATTTCTATATCCTCGTACTTAAATGTAA
TGGGATTAAGTACTTGCTGTACTTCTAACAGTGTAAGGTAAACTTTTCAG
AACGCCCCCAACTCAGACAGTAATCTCCTTAGGAACAGGATCTCAGTGTC
TCTCAGCTCTGTATTCTCCATGCTGTCTAGCTAACACCGTGTGGAGAGTG
GAGCACAGACCACTGGGGGTGTGGTGGCAGACTTGCTGTGAGTGGAGGTG
GGCATCTGATGCATTATTGGGAGGAAGGCAGTGAACTGTCAATGTGATGA
TGCAGACGGTTGCTCAGTAGTTACAGGGTGACTGAGCACCAGTCTGGCAG
AACGTTAGTCCTCAGGAGACTAACTTCCTCTCAAAAATTAAGTTTAAAAA
ATTAATGCTGATACAGATTATTCATACAGATTAT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGAAACCC
TGTCTCGAACTCCCTCGCTCCCCTAAAGAACCCAAAATAAAGCAAAACAA
AAATCAAACAAACAGGACCAGCAAGAGTCTGTGGTAGACTAGGACCCCAT
GTATACTAGAGGGGCCTACAGCTGCATATTTCAGTCTTCCTCCCTATTAT
GACAGACCTCCTGCTTGCTCTGTGGCAGCCCAGGTGAGGGTGGACAGAGC
TAGCCCATGCTGCACCTGTACTGCCCCTGTGGCTCAGCTCAGGAAAGCCA
TGTGATCCATTTTTTCACAAGCCGAAGACCCTCACCCTCACTATTGGTCC
CTCTGACCTAAGGAAGCCACCTGTTCCCAGTCTCAGAGAGCATTTTGCAG
TTATTTCAACTCTACAAAAAGACTTTAGAGAAAGCTTTGAGTCCCATTGC
AGATCTCCTGGCCAGGGCTAAGAGGACACTGACCCCATGTGGCCATATGT
AGAAGTGCAACGGGAGAGGGGGAAAATTTACTGTCTCCTCCGATAGTTTC
AAGTCTGAGCAGGACCATGATTTCACGGACCACCTGAGGACATCTAGGAG
GTGGGCAGCTGTGTTTGATGGACAGGTAGGTTCAAGATGTGCTCAAAGCA
CACAATGGATTTTGATAGGCTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_d01.b1 MSMg01no269_d01.b1 CHROMAT_FILE:
MSMg01no269_d01.b1 PHD_FILE: MSMg01no269_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:35 2005
         (640 letters)



>mm_chr1_158526703_158527742
          Length = 1040

 Score = 1222 bits (632), Expect = 0.0
 Identities = 635/636 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaccagttccaaagctgtttgtggttcctctagttcaaatctcgacacttgaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaccagttccaaagctgtttgtggttcctctagttcaaatctcgacacttgaac 264

                                                                       
Query: 65  tcatggtcctcaatgcctcagactcttggatgctgggattgcagatgtttgccaccgtgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcatggtcctcaatgcctcagactcttggatgctgggattgcagatgtttgccaccgtgc 324

                                                                       
Query: 125 ctggctcttgggaaatactatggtgatcagtaggagtatctgtgaccaatagaggttaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggctcttgggaaatactatggtgatcagtaggagtatctgtgaccaatagaggttaga 384

                                                                       
Query: 185 gttggggtttttaacaatgattttattatttctcagaagagttttctggttctaggaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttggggtttttaacaatgattttattatttctcagaagagttttctggttctaggaaaa 444

                                                                       
Query: 245 gaatttcttgctgtttcacggggtgttttaccaacttgtatttctatatcctcgtactta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaatttcttgctgtttcacggggtgttttaccaacttgtatttctatatcctcgtactta 504

                                                                       
Query: 305 aatgtaatgggattaagtacttgctgtacttctaacagtgtaaggtaaacttttcagaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatgtaatgggattaagtacttgctgtacttctaacagtgtaaggtaaacttttcagaac 564

                                                                       
Query: 365 gcccccaactcagacagtaatctccttaggaacaggatctcagtgtctctcagctctgta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcccccaactcagacagtaatctccttaggaacaggatctcagtgtctctcagctctgta 624

                                                                       
Query: 425 ttctccatgctgtctagctaacaccgtgtggagagtggagcacagaccactgggggtgtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttctccatgctgtctagctaacaccgtgtggagagtggagcacagaccactgggggtgtg 684

                                                                       
Query: 485 gtggcagacttgctgtgagtggaggtgggcatctgatgcattattgggaggaaggcagtg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtggcagacttgctgtgagtggaggtgggcatctgatgcattattgggaggaaggcagtg 744

                                                                       
Query: 545 aactgtcaatgtgatgatgcagacggttgctcagtagttacagggtgactgagcaccagt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aactgtcaatgtgatgatgcagacggttgctcagtagttacagggtgactgagcaccagt 804

                                               
Query: 605 ctggcagaacgttagtcctcaggagactaacttcct 640
           | ||||||||||||||||||||||||||||||||||
Sbjct: 805 caggcagaacgttagtcctcaggagactaacttcct 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no269_d01.g1 MSMg01no269_d01.g1 CHROMAT_FILE:
MSMg01no269_d01.g1 PHD_FILE: MSMg01no269_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:36 2005
         (610 letters)



>mm_chr1_158671820_158672829
          Length = 1010

 Score = 1096 bits (567), Expect = 0.0
 Identities = 598/615 (97%), Gaps = 13/615 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctacacagagaaaccctgtctcgaactccctcgctcccctaaagaa 60
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 855 caggacagccagggctacacagagaaaccctgtctcgaactccc-cactcccctaaagaa 797

                                                                       
Query: 61  cccaaaataaagcaaaacaaaaatcaaacaaacaggaccagcaagagtctgtggtagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 cccaaaataaagcaaaacaaaaatcaaacaaacaggaccagcaagagtctgtggtagact 737

                                                                       
Query: 121 aggaccccatgtatactagaggggcctacagctgcatatttcagtcttcctccctattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aggaccccatgtatactagaggggcctacagctgcatatttcagtcttcctccctattat 677

                                                                       
Query: 181 gacagacctcctgcttgctctgtggcagcccaggtgagggtggacagagctagcccatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gacagacctcctgcttgctctgtggcagcccaggtgagggtggacagagctagcccatgc 617

                                                                       
Query: 241 tgcacctgtactgcccctgtggctcagctcaggaaagccatgtgatcca------ttttt 294
           |||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct: 616 tgcacctgtactgcccctgtggctcagctcaggaaagccatgtgatccaccacac----- 562

                                                                       
Query: 295 tcacaagccgaagaccctcaccctcactattggtccctctgacctaaggaagccacctgt 354
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 -cacaagctgaagaccctcaccctcactattggtccctctgacctaaggaagccacctgt 503

                                                                       
Query: 355 tcccagtctcagagagcattttgcagttatttcaactctacaaaaagactttagagaaag 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcccagtctcagagagcattttgcagttatttcaactctacaaaaagactttagagaaag 443

                                                                       
Query: 415 ctttgagtcccattgcagatctcctggccagggctaagaggacactgaccccatgtggcc 474
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 442 ctttgagtcccattgcagatctcctggccaggcctaagaggacactgaccccatgtggcc 383

                                                                       
Query: 475 atatgtagaagtgcaacgggagagggggaaaatttactgtctcctccgatagtttcaagt 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atatgtagaagtgcaacgggagagggggaaaatttactgtctcctccgatagtttcaagt 323

                                                                       
Query: 535 ctgagcaggaccatgatttcacggaccacctgaggacatctaggaggtgggcagctgtgt 594
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 322 ctgagcaggaccatgatttcacggaccacctgagcacatctaggaggtgggcagctgtgt 263

                          
Query: 595 ttgatggacaggtag 609
           |||||||||||||||
Sbjct: 262 ttgatggacaggtag 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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