BAC Information

Click to search

BAC

Clone NameMSMg01-269G09
Chromosome1 (Build37)
Map Location 157,064,046 - 157,177,931
singlet/doubletdoublet
Overlap geneBC034090, Xpr1
Upstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6, EG667867
Downstream geneEG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269G09.T7 (MSMg01no269_g09.b1)MSMg01-269G09.TJ (MSMg01no269_g09.g1)
ACCAG409522AG409523
length736734
length of high quality
(start - end)		569 (42 - 610)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no269_g09.b1 PHD_FILE: MSMg01no269_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:51 2005CHROMAT_FILE: MSMg01no269_g09.g1 PHD_FILE: MSMg01no269_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,177,367 - 157,177,931)(157,064,046 - 157,064,332)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGACATTTCCATTTTCTGAAAGGACTCTTGGCCAAAGCAGTACAACAA
CCCATTTTGAAATGGTTATATGTGGGAAAGTTGGAAATAAAAATGTTTGG
AACTTAGGATTTTCATTCATTTACTTGGAAGAGAAATGAGAACCCATGCC
CAGGGAGCTGACCCCCGCCAGCAGTGTGGCGGTGCATCTGGGAAGGCTGG
CGCTGGTGCTCCCGAGGCTCAGTGTGCTCGGTCATCACTGCTGCTTCCCT
GCTTTCATCTCCTTCAATGACACTACCATGATGATTGTGTTTCTCTCTTC
TTCCTATAGAATCTGAATTTTACAGGGTTTCGGAAAATCCTCAAAAAGCA
TGACAAGATCCTGGAAACATCTCGTGGAGCAGATTGGCGAGTGATTCATG
TAGAGGTGGCCCCATTTTATACATGCAAGAAAATTAACCAGCTCATTTCT
GAGACTGAGGTACAACACCTGCTTGCTTGCCATATATGTTCAGTTTCCAT
TGTGTGTGCGGGTTTTTTTTTTTTTGTCTCATTTTATTACAATGAAGTTT
AACAGTACAGAAAAATCACATGACTATAATAATGGGCCAGTTTTCTTAAA
CCCTGCAACAACAGGAGGGACTCTCTCTAATTACATTAAATATTGTTACA
CATTCAAACTTCCAGTGTACAAGTACTTGGAAACAG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGACGGTGGTATTGAATTAGGATACAG
TAGGCAACCCCGCCAGACACCTGGAGCCAACATCGATCTGAACAAAGCCT
CCAGGAGCTGGGGAGGGAGGGCTGTGGACAGGACTGCAGACAGGCAGGCC
CACTCCACAAGCCCAGACACACCAGCAGCTGGAGGATGGGGCGGTTGAAA
TACATCAACCACATCAAAGGAATAGCTGAGACCCGGCAAGCACAGACAGT
TTCCCTCTGCCCCTCTGGAAGAGCCCTGCTGGCTGGGATTTCTAGATGTC
ACAGGACATCTTGGGGGCAGTGGACCCAAATCGGCCAGCTCTACCCCCTC
AGCATGAGGGCTCCTGGGACCTGGCACCTAGGAAGAGCTTCCGAGGAATG
AGGAGAGCTTTTCTCCATTGCTCAACCAAAGCCCCAAAGGAACTTGGCCA
CACCCCAGGGGCTTTACTGAGGATCCCGAGAGCATACCTGAGTCTCGCCG
GCCACTGCCATGGGCTACATGGAATCCAAAGGTGCCCTTTGGGGGTCGCT
GCAGCTGCAGCTGGCTCGTGCCATCTGGGAACACCTCCACCACGCGGCCC
ACAGTACGAGCCAGGCTAGGGGCACCCACATCTTCCACACTGAGGGCACG
ATGGGGAAAGGCCTTGGCTGGGCTACAAGGAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_g09.b1 MSMg01no269_g09.b1 CHROMAT_FILE:
MSMg01no269_g09.b1 PHD_FILE: MSMg01no269_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:51 2005
         (569 letters)



>mm_chr1_157177163_157178131
          Length = 969

 Score = 1085 bits (561), Expect = 0.0
 Identities = 564/565 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagacatttccattttctgaaaggactcttggccaaagcagtacaacaacccat 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gaattcaagacattttcattttctgaaaggactcttggccaaagcagtacaacaacccat 710

                                                                       
Query: 65  tttgaaatggttatatgtgggaaagttggaaataaaaatgtttggaacttaggattttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tttgaaatggttatatgtgggaaagttggaaataaaaatgtttggaacttaggattttca 650

                                                                       
Query: 125 ttcatttacttggaagagaaatgagaacccatgcccagggagctgacccccgccagcagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttcatttacttggaagagaaatgagaacccatgcccagggagctgacccccgccagcagt 590

                                                                       
Query: 185 gtggcggtgcatctgggaaggctggcgctggtgctcccgaggctcagtgtgctcggtcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gtggcggtgcatctgggaaggctggcgctggtgctcccgaggctcagtgtgctcggtcat 530

                                                                       
Query: 245 cactgctgcttccctgctttcatctccttcaatgacactaccatgatgattgtgtttctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 cactgctgcttccctgctttcatctccttcaatgacactaccatgatgattgtgtttctc 470

                                                                       
Query: 305 tcttcttcctatagaatctgaattttacagggtttcggaaaatcctcaaaaagcatgaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tcttcttcctatagaatctgaattttacagggtttcggaaaatcctcaaaaagcatgaca 410

                                                                       
Query: 365 agatcctggaaacatctcgtggagcagattggcgagtgattcatgtagaggtggccccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agatcctggaaacatctcgtggagcagattggcgagtgattcatgtagaggtggccccat 350

                                                                       
Query: 425 tttatacatgcaagaaaattaaccagctcatttctgagactgaggtacaacacctgcttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tttatacatgcaagaaaattaaccagctcatttctgagactgaggtacaacacctgcttg 290

                                                                       
Query: 485 cttgccatatatgttcagtttccattgtgtgtgcgggtttttttttttttgtctcatttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cttgccatatatgttcagtttccattgtgtgtgcgggtttttttttttttgtctcatttt 230

                                    
Query: 545 attacaatgaagtttaacagtacag 569
           |||||||||||||||||||||||||
Sbjct: 229 attacaatgaagtttaacagtacag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no269_g09.g1 MSMg01no269_g09.g1 CHROMAT_FILE:
MSMg01no269_g09.g1 PHD_FILE: MSMg01no269_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:51 2005
         (291 letters)



>mm_chr1_157063846_157064536
          Length = 691

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgacggtggtattgaattaggatacagtaggcaaccccgccagacacctggagccaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgacggtggtattgaattaggatacagtaggcaaccccgccagacacctggagccaac 260

                                                                       
Query: 61  atcgatctgaacaaagcctccaggagctggggagggagggctgtggacaggactgcagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcgatctgaacaaagcctccaggagctggggagggagggctgtggacaggactgcagac 320

                                                                       
Query: 121 aggcaggcccactccacaagcccagacacaccagcagctggaggatggggcggttgaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcaggcccactccacaagcccagacacaccagcagctggaggatggggcggttgaaat 380

                                                                       
Query: 181 acatcaaccacatcaaaggaatagctgagacccggcaagcacagacagtttccctctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatcaaccacatcaaaggaatagctgagacccggcaagcacagacagtttccctctgcc 440

                                                          
Query: 241 cctctggaagagccctgctggctgggatttctagatgtcacaggaca 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctctggaagagccctgctggctgggatttctagatgtcacaggaca 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |