| Query= MSMg01no270_a20.g1 MSMg01no270_a20.g1 CHROMAT_FILE:
MSMg01no270_a20.g1 PHD_FILE: MSMg01no270_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:38 2005
(620 letters)
>mm_chr1_35456949_35457968
Length = 1020
Score = 994 bits (514), Expect = 0.0
Identities = 595/656 (90%), Gaps = 54/656 (8%)
Strand = Plus / Plus
Query: 1 taattctgcatctcactagtttcatgatcttggagtctattgcaggggttgaaatatata 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 174 taattctgcatctcactagtttcatgatcctggagtctattgcaggggttgaaatatata 233
Query: 61 tatatatatatatatatatat------------------------------------gga 84
||||||||||||||||||||| |||
Sbjct: 234 tatatatatatatatatatatatatacatatacatatatatatatatatatatatcagga 293
Query: 85 ggtagactacttgtcatgaaagcatgaagactgagttcaaaattcccagtacctctgtat 144
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 294 ggtagactacttgtcatgaaagcatgaatactgagttcaaaattcccagtacctctgtat 353
Query: 145 gaggcagagcacaaatgtgtgctcttgtaataatctctgtgatggaggatgtggagatgg 204
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaggcagagcacaaacctgtgctcttgtaataatctctgtgatggaggatgtggagatgg 413
Query: 205 gattcctggagatcattaagcaagcagactcatcaaactggcaagcctcaggccagtgag 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gattcctggagatcattaagcaagcagactcatcaaactggcaagcctcaggccagtgag 473
Query: 265 aaaccccacctcagaaaacaagggggatagctcctgaggcacaatacttgaggttgacct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aaaccccacctcagaaaacaagggggatagctcctgaggcacaatacttgaggttgacct 533
Query: 325 ctgacctccacatgtgtaccctcgtgcacatgcacacacatacacatggtctagtgtggt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ctgacctccacatgtgtaccctcgtgcacatgcacacacatacacatggtctagtgtggt 593
Query: 385 ctcccttcctctcactccactgacctcttctgcaatctgtttccactgtgtagagttcat 444
||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctcccttcc---------actgacctcttctgcaatctgtttccactgtgtagagttcat 644
Query: 445 ccagacctgaggaaagttgggtgatgatgcatactcagtgagagagccaaaggatgctcg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ccagacctgaggaaagttgggtgatgatgcatactcagtgagagagccaaaggatgctcg 704
Query: 505 gctgccgagtcttcaaacagagagcggacagcagggacggcagggacgccgcagtgccgt 564
||||| ||||||||||||||||||||||| ||||||||| ||||||||| ||
Sbjct: 705 gctgctgagtcttcaaacagagagcggac---------ggcagggacaccgcagtgcagt 755
Query: 565 cctctgcctacaacagtcacaaacagaataaataatcagcctccagtgagacgcag 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 cctctgcctacaacagtcacaaacagaataaataatcagcctccagtgagacgcag 811
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 54 atatatatatatatatatatatatatat 81
||||||||||||||||||||||||||||
Sbjct: 254 atatatatatatatatatatatatatat 227
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 54 atatatatatatatatatatatatatat 81
||||||||||||||||||||||||||||
Sbjct: 256 atatatatatatatatatatatatatat 229
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 54 atatatatatatatatatatatatatat 81
||||||||||||||||||||||||||||
Sbjct: 258 atatatatatatatatatatatatatat 231
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 4
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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