Query= MSMg01no270_b12.b1 MSMg01no270_b12.b1 CHROMAT_FILE:
MSMg01no270_b12.b1 PHD_FILE: MSMg01no270_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:40 2005
(322 letters)
>mm_chr1_126596735_126597456
Length = 722
Score = 553 bits (286), Expect = e-162
Identities = 302/316 (95%), Gaps = 14/316 (4%)
Strand = Plus / Minus
Query: 5 gaattctactatcatcttttggtttatttttttcttgacaactgtttactgaggatcaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaattctactatcatcttttggtttatttttttcttgacaactgtttactgaggatcaga 264
Query: 65 tacaatgttaagtatacaagtctttataatccatgatctatccattcatctgctcactat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tacaatgttaagtatacaagtctttataatccatgatctatccattcatctgctcactat 204
Query: 125 ctctctctctctctctctctctctctctctctctctctctctctctctctctctctccct 184
|||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 203 ctctctctctctctctctctctctctctctctctctctctctct--------------ct 158
Query: 185 ccctctgtctatctatccatacttcatctatccattctcctatatatcctctcactcacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ccctctgtctatctatccatacttcatctatccattctcctatatatcctctcactcacc 98
Query: 245 tattcatctatcattcactaatctatccatccatccacccatccaacctccagtcattca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 tattcatctatcattcactaatctatccatccatccacccatccaacctccagtcattca 38
Query: 305 tccagcttttaatcat 320
||||||||||||||||
Sbjct: 37 tccagcttttaatcat 22
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_b12.g1 MSMg01no270_b12.g1 CHROMAT_FILE:
MSMg01no270_b12.g1 PHD_FILE: MSMg01no270_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:40 2005
(621 letters)
>mm_chr1_126489963_126490983
Length = 1021
Score = 1193 bits (617), Expect = 0.0
Identities = 620/621 (99%)
Strand = Plus / Plus
Query: 1 agacaatcctgtctgtcatctggttagactgctcacctgcctgcaacctaggtaagtgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacaatcctgtctgtcatctggttagactgctcacctgcctgcaacctaggtaagtgca 260
Query: 61 gaaatggaatctcatgttgagcttagttcatttgtgtgtacagaagagacagcttgaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatggaatctcatgttgagcttagttcatttgtgtgtacagaagagacagcttgaatc 320
Query: 121 taaatagcactatatattagggatgggaaaacataccaatctatgcagtctctcaatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatagcactatatattagggatgggaaaacataccaatctatgcagtctctcaatttt 380
Query: 181 tttaacttaatgatatttgaaaaagggggaaagtaattatcccacagtgcatgccatatt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tttaacttaatgatatttgaaaaagggggaaagtaattatcccacagtgcatgccatagt 440
Query: 241 taatattgatgtcaatctaagagagtctacaatcacttgattcacctctgggcttgtctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatattgatgtcaatctaagagagtctacaatcacttgattcacctctgggcttgtctg 500
Query: 301 tgagtaactttcctagactgagttaactgagttgggaagataagcttctaaatgtgggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagtaactttcctagactgagttaactgagttgggaagataagcttctaaatgtgggca 560
Query: 361 gcatcgttctacaagtagggattctgggataaatacaaaggagagagtgagctgagcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatcgttctacaagtagggattctgggataaatacaaaggagagagtgagctgagcaca 620
Query: 421 aacgttcttgtcttttgctttcagattgtgactgcactgtgaccagctgcctcatgctct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacgttcttgtcttttgctttcagattgtgactgcactgtgaccagctgcctcatgctct 680
Query: 481 ggatgtcatagcgtcctagatgatggactgtgccctctcactgtgctcagttcttccgta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggatgtcatagcgtcctagatgatggactgtgccctctcactgtgctcagttcttccgta 740
Query: 541 agttccttctcctcaggtatttttatcaccaacatatagaacctaacagaactagggagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agttccttctcctcaggtatttttatcaccaacatatagaacctaacagaactagggagt 800
Query: 601 gtggataacaggcccatgtgg 621
|||||||||||||||||||||
Sbjct: 801 gtggataacaggcccatgtgg 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
