Query= MSMg01no270_c02.b1 MSMg01no270_c02.b1 CHROMAT_FILE:
MSMg01no270_c02.b1 PHD_FILE: MSMg01no270_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:43 2005
(685 letters)
>mm_chr1_11239177_11240262
Length = 1086
Score = 1288 bits (666), Expect = 0.0
Identities = 678/682 (99%), Gaps = 1/682 (0%)
Strand = Plus / Minus
Query: 5 gaattcactatttcattcttaaattttattttagttgatgacaatgattttattggcaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gaattcactatttcattcttaaattttattttagttgatgacaatgattttattggcaat 827
Query: 65 tacttaataactacagaatttggtagcattcaaggacactgaaacatttcttcccacctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tacttaataactacagaatttggtagcattcaaggacactgaaacatttcttcccacctt 767
Query: 125 atggctgcatacagcataaaaggtgcttatagctctctggcaatgttgctcatggcagat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 atggctgcatacagcataaaaggtgcttatagctctctggcaatgttgctcatggcagat 707
Query: 185 ttgggtaaccagctttcctgtctttgggttaaatttaagacaaggagagcaggggctgga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttgggtaaccagctttcctgtctttgggttaaatttaagacaaggagagcaggggctgga 647
Query: 245 catccttccaaatagtttttcatgatcacctctacacttttatagtttgtgggtgtcaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 catccttccaaatagtttttcatgatcacctctacacttttatagtttgtgggtgtcaaa 587
Query: 305 aggggcagtgtcaatgtttaaatcacaggagtgtggctgtgggcaagcaaggtccttcct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aggggcagtgtcaatgtttaaatcacaggagtgtggctgtgggcaagcaaggtccttcct 527
Query: 365 ggcctattctgcagagctcttgtatggaggttaactcttcctaagtgggctgtgaggtca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggcctattctgcagagctcttgtatggaggttaactcttcctaagtgggctgtgaggtca 467
Query: 425 gttagcccagaaccaagcccctcagaattacttggcactcatactttttcctctgattaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gttagcccagaaccaagcccctcagaattacttggcactcatactttttcctctgattaa 407
Query: 485 attgctctgtaggaaacccatgaaacttatcttcagaccaaaatctctacgatcggctac 544
||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct: 406 attgctctgtaggaaacccatcaaacttatcttcagaccaaaatctctaggattggctac 347
Query: 545 tctgcatgctaggcaggttctgaagactgctcacacttcttctcagcccataaatcatca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tctgcatgctaggcaggttctgaagactgctcacacttcttctcagcccataaatcatca 287
Query: 605 ctatctccaacagagaaagg-aaaaaaattgtagacattaagagcctgccccaagtgatg 663
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctatctccaacagagaaaggaaaaaaaattgtagacattaagagcctgccccaagtgatg 227
Query: 664 tggctattcaggggttctaggc 685
||||||||||||||||||||||
Sbjct: 226 tggctattcaggggttctaggc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1086
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1076
Effective search space: 726300
Effective search space used: 726300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_c02.g1 MSMg01no270_c02.g1 CHROMAT_FILE:
MSMg01no270_c02.g1 PHD_FILE: MSMg01no270_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:43 2005
(660 letters)
>mm_chr1_11105542_11106600
Length = 1059
Score = 1212 bits (627), Expect = 0.0
Identities = 651/659 (98%), Gaps = 1/659 (0%)
Strand = Plus / Plus
Query: 1 ctatctcctaaaacatttatcatttctttatcttatcttgaacctaacctaggtggcaca 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ctatctcctaaaacatttatcatttctttatcttatcttgaacctaa-gtaggtggcaca 259
Query: 61 acattgtggtcaaccagttaaccttttcctttctcatttagacttctacatccagagaca 120
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 260 aaattgtggtcaaccagttaaccttttcctttctcatttagacttctatatccagagaca 319
Query: 121 cttcattactgttgtggtttgaatatgtttgacccccataaactcatgtgtttaaatact 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttcattactgtggtggtttgaatatgtttgacccccataaactcatgtgtttaaatact 379
Query: 181 tggccataaagagtagtactattaaaagatgtggccttatggaggaggtgtggtcttgtt 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 380 tggccataaagagtagtactattaaaaggtgtggccttatggaggaggtgtggtcttgtt 439
Query: 241 agagcaagtatatcactgtgtggatgggctttcaggtttcctatgctcaggcttcaccca 300
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 440 agagcaagtatatcactgtgtagatgggctttgaggtttcctatgctcaggcttcaccca 499
Query: 301 gtgcagaagatagtctcctggctgcctttagatcaagatgtagaacttttgcttttagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgcagaagatagtctcctggctgcctttagatcaagatgtagaacttttgcttttagat 559
Query: 361 aaagatgtagtctgcctgcatgttgccatgcttcccaccatgatgataatggactgaacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaagatgtagtctgcctgcatgttgccatgcttcccaccatgatgataatggactgaacc 619
Query: 421 tctgaaattgtaagtaagctccaattaaatgtctgcctttctaagagttgccttggccat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctgaaattgtaagtaagctccaattaaatgtctgcctttctaagagttgccttggccat 679
Query: 481 gttatctcttcacagcaatggaaccctaattaagacaattaactactaaacaaaaagagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gttatctcttcacagcaatggaaccctaattaagacaattaactactaaacaaaaagagg 739
Query: 541 tttcttctactgcaatcaggccactgttgtactagtagccatatcttcccagggctgtca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tttcttctactgcaatcaggccactgttgtactagtagccatatcttcccagggctgtca 799
Query: 601 ttcttgaagcttgtattgttcacatcaaggtgatattgctgaatacttttatcctccag 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttcttgaagcttgtattgttcacatcaaggtgatattgctgaatacttttatcctccag 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1059
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1049
Effective search space: 681850
Effective search space used: 681850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
