BAC Information

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BAC

Clone NameMSMg01-270F13
Chromosome1 (Build37)
Map Location 102,635,255 - 102,635,498
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270F13.T7 (MSMg01no270_f13.b1)MSMg01-270F13.TJ (MSMg01no270_f13.g1)
ACCAG410208AG410209
length725764
length of high quality
(start - end)
315 (42 - 356)250 (73 - 322)
definitionCHROMAT_FILE: MSMg01no270_f13.b1 PHD_FILE: MSMg01no270_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:58 2005CHROMAT_FILE: MSMg01no270_f13.g1 PHD_FILE: MSMg01no270_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCCTTAAAGAGATAGCCTCGCTGGCCATCTATCCCTTGCTTCAGGGAAG
ATGAGTGGAGATGAGAGCCCTGGGATGTATGCTTGTTATTGTGTGTGTGT
TTTGTGTTTGGCACATGTGTTAGGTGCAGAGTGTGCGGGCCTGCACTTTC
GCCATGGTAGCGTAGGCTTTTGCTGCAGTGGAGGCAGGACAATCTCCTCA
GATTCGGTTTGCCGCTCTAAAAGAAATTATGCTGCATTATGCCGTGGGGT
GTGAGGCTAAGCACTGCTCTTAGGATAGCTTGCTGTTGGCATCCTGTGGA
AGGCTTTTCTTANCGCACCCCCCCCCCCCGACCTAGTTCCATTCCCCCAG
GAAAAACGACAGGCGAGCTGAACAAGAAATCTCTGGGTGATGAGCCTAAG
AGATGGTTTTGTGTAGGGCCCCTATGCTTGCACACTGGGGATCAGACCTC
TACCTTCACCCATGAGGCTTGCTTGCAGCAATTAAGATCTGGCCATAGGT
TAATTAACATCCTGGCCTTTTGATGCACCTGCCGCAAGTCAAACACAATC
TCCCCAGAAGTGGCTTGGCATGATTGAGAGGTAGTCAGTGATAAGACTCC
CTGCGCTTGTCACCAACCTAAGACAGGCATCCAACCCATGCTATTTGTCT
CCCATAGACGGATATGGGTTTGGTG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACATCTTCTCTCCCCTCATTTACATTTT
CACGTTTTTGAGTGTGAGCCCCAATAAGGAAACTGGAATGAAATGTTGGG
GGTAAAAAAATTGTTAGAAGATTTATTACCACCATGGAGAAACAAACAGG
AACAGGAACATAGATAAACTAACATCATAGGAGCTCTGAGGAGACTTCAT
TCCCCAGTGCCAGAATGGACTGTCAGGTTTAGGGTTAGGGTTAGGGTTAG
GGTTAGGGTTAGGGTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTTTTTTTTTTCCCCCCCCCCCCCCCCCNNTTTTTTTTTTTTTTT
TTTTCTTCTCCCCCCCCCCTTTAAAAAAAAAAAATTTTTCTTCTTCCTCC
CTCTCTTCTTTTAACTCCCCTTCTCTCTTCTTCACCCCCCATTTTTTTCC
TCTTTACACCCTCTTCTCCTTTTTCCCTCCCCTACTCTTCTACTTTATCC
TTCCTCCCCTTCCTTTCTTTCTTTTCTCTTCCCATTTTCTTTCTTCATCT
CCTCTTTTTCCTTCTTCTTATTTCCCCCACTTTTTTTTCTCATTTCTTTT
CTTACTCCCTCTCCTTCTCCTCATTCTCTCCCCATATCTTCTTTCTTTTA
TCCCTCCCTCCCCCTCCCTCTATTTATCTTTTCCTCTTTTCCCAACCCCC
TCTATTTTTACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_f13.g1 MSMg01no270_f13.g1 CHROMAT_FILE:
MSMg01no270_f13.g1 PHD_FILE: MSMg01no270_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:58 2005
         (250 letters)



>mm_chr1_102635055_102635704
          Length = 650

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatcttctctcccctcatttacattttcacgtttttgagtgtgagccccaataaggaaa 60
           |||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct: 201 acatcttctctcccctcatttacattttcacgtttttgagtgagagtctcaataaggaaa 260

                                                                       
Query: 61  ctggaatgaaatgttgggggtaaaaaaattgttagaagatttattaccaccatggagaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ctggaatgaaatgttgggggtaaaaaaattgttagaagatttattaccaccatggagaga 320

                                                                       
Query: 121 caaacaggaacaggaacatagataaactaacatcataggagctctgaggagacttcattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaacaggaacaggaacatagataaactaacatcataggagctctgaggagacttcattc 380

                                                                       
Query: 181 cccagtgccagaatggactgtcaggtttagggttagggttagggttagggttagggttag 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccagtgccagaatggactttcaggtttagggttagggttagggttagggttagggttag 440

               
Query: 241 ggtt 244
           ||||
Sbjct: 441 ggtt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)