Query= MSMg01no270_h09.b1 MSMg01no270_h09.b1 CHROMAT_FILE:
MSMg01no270_h09.b1 PHD_FILE: MSMg01no270_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:07 2005
(315 letters)
>mm_chr1_161894965_161895679
Length = 715
Score = 536 bits (277), Expect = e-157
Identities = 301/309 (97%)
Strand = Plus / Plus
Query: 5 gaattcaatatccgtatatgaaattctcaacaaaagaaataaataaaatgttttctattt 64
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatatccatatatgaaattcttaacaaaagaaataaataaaatgttttctattt 264
Query: 65 gcaacatttcaaagtccactttctacctgaagctctttttctccagtctgtcttgcacca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaacatttcaaagtccactttctacctgaagctctttttctccagtctgtcttgcacca 324
Query: 125 ccacaatagtaatcgcatgtgtgctgttacttttatgatctcttctgtcatccacgtcct 184
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 325 ccacaatagtaatcgcatgtatgctattacttttatgatctcttctgtcatccacatcct 384
Query: 185 aaaatttcattacagcatgcctggatgtgcacacatttctacttcttttaccagagactg 244
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 385 aaaatttcattacagcgtgcctggatgtgcacacatttctacttctttttccagagaccg 444
Query: 245 ggaggaagtttgaacctgcagattttattcttcaatagttatgcaaagttctccactctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaggaagtttgaacctgcagattttattcttcaatagttatgcaaagttctccactctt 504
Query: 305 acctcttca 313
|||||||||
Sbjct: 505 acctcttca 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_h09.g1 MSMg01no270_h09.g1 CHROMAT_FILE:
MSMg01no270_h09.g1 PHD_FILE: MSMg01no270_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:07 2005
(667 letters)
>mm_chr1_162065305_162066373
Length = 1069
Score = 1091 bits (564), Expect = 0.0
Identities = 576/580 (99%), Gaps = 2/580 (0%)
Strand = Plus / Minus
Query: 90 aggctttatttaggaaagtagagaacatagtgaggggacaggtataggcttctcaagaga 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 aggctttatttaggaaagtagagaacatagtgaggggacaggtataggcttctcaagaga 1010
Query: 150 cagagactaacaaggatttaacactatctacaaaggattttgaggtcagactggtcaaag 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 cagagactaacaaggatttaacactatctacaaaggattttgaggtcagactggtcaaag 950
Query: 210 aacatgatcccgtatctaaatataaaaatctaaaattaaaacattgaattaaaatattct 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 aacatgatcccgtatctaaatataaaaatctaaaattaaaacattgaattaaaatattct 890
Query: 270 agtatacttattttttaattcaagaattgctttactcgtcaatgagattataaggtgttt 329
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 889 agtatacttattttttaattcaagaattgttttactcgtcaatgagattataaggtgttt 830
Query: 330 tatgagtgtactcttcaggtttatgaatgagctaaggggttgctgagaagagaagtttaa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tatgagtgtactcttcaggtttatgaatgagctaaggggttgctgagaagagaagtttaa 770
Query: 390 gtcaaaaaggtcaaaggaattattgctgtaccttatatcaaaacaaaatcatgacctttt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gtcaaaaaggtcaaaggaattattgctgtaccttatatcaaaacaaaatcatgacctttt 710
Query: 450 gactgtaaactctgttcacaacttttttgagacttttttttt-cagaaaaaa-gaaaatc 507
|||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||
Sbjct: 709 gactgtaaactctgttcacaacctttttgagacttttttttttcagaaaaaaagaaaatc 650
Query: 508 ctcaggtttacagacaatgaacaatcggatatggttgaactcaaagggcactaacatttt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ctcaggtttacagacaatgaacaatcggatatggttgaactcaaagggcactaacatttt 590
Query: 568 gtccttaaacattaagcatggttcattacttgttttaactctccagtttcatatatctct 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gtccttaaacattaagcatggttcattacttgttttaactctccagtttcatatatctct 530
Query: 628 caggaaaagtaacattgtctccctgcaggcaatctttaca 667
||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 caggaaaagtaacattgtctccctgcaggcaatctttaca 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1069
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1059
Effective search space: 695763
Effective search space used: 695763
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
