BAC Information

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BAC

Clone NameMSMg01-270H18
Chromosome1 (Build37)
Map Location 136,516,724 - 136,701,522
singlet/doubletdoublet
Overlap geneJarid1b, LOC100042418, Syt2, Ppp1r12b
Upstream geneZc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik
Downstream geneUbe2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270H18.T7 (MSMg01no270_h18.b1)MSMg01-270H18.TJ (MSMg01no270_h18.g1)
ACCAG410305AG410306
length734752
length of high quality
(start - end)		318 (40 - 357)643 (70 - 712)
definitionCHROMAT_FILE: MSMg01no270_h18.b1 PHD_FILE: MSMg01no270_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:08 2005CHROMAT_FILE: MSMg01no270_h18.g1 PHD_FILE: MSMg01no270_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,701,208 - 136,701,522)(136,516,724 - 136,517,366)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACAATAATGGGCCTTTTAGATGGAGCCTATAATTCCAGCTTGTTGTAGA
ATTAACTAGTCTTAAGGAACTGTTTTCACATTGAAAGTGAATCAAGACTT
CTTTGTAAGTCCTTTTCAACTGCATTCATTAAACTGACCCCCCCACCCCA
AGTAGATGATCACTTTTGCTTATTTAACTTCACAAAATACGTGTTTGGAA
TAAAAGAGATATCGAAACAGCCAAGGCAAATGAGTCATTAGTTGGAAGTA
GTTAAGGGGAAAAGTATGAATTCCATGTGAGAAGGGGGGGAGTGGGATAG
AGTTTCCATTATTCTGCACCCCACACCCCTGTTACTCTGAGGATAAGCCC
ACTGGCTTTGAAAGCATCTGGCTTAGAAATACTGGACAATGCGGCAGTGA
CAAGAGAGCAAGAGATTAAACAAGATGTTTCTTCAAGGCCAAGTGCAAGC
TCCTTCAACGCCCAGCAAAGACATTCCTTTCTTGTTAACTCTTAATTTTC
TCTGTGCCGCTGAGCCCTGTCATCCACCAGTCATTGTTTCCTGCCACCTT
CATGCCACTTTCAAATCTTACTCCTTCCTGACTGTGGTGTCCGAAGAAAC
TCTGATATATTTTCTAATAGAAACTTAGCCAATAAGATCTCTGCTCTACA
GAGCTTACTTTGTAGTGCCCAGAGTTTCAAGCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAAGAGGGTGTTGGGTCCCCTGGGACTACA
CTTACATGTGGGGCCTGGGAATCAAGCCTGGGTCCTCTGAGCCACCTCCC
CAAGCACAGTTATATAAATCTTTCTTTGACAATTTCCCCAACTTCTTCTC
CCACTCCTTAGACACCTCTAGTGGGTCCCCTCTCTTTTATTTCTAACCCA
TAGACCTATTCGTGACTTACTGAATCAGAATGTCTGGGATGAGAACCAGG
AAACTGTGTATAAGTAAATGGGCTTTCCACATGATTCTTATATGTGCTGA
TGTTTTAAGAAACATTGGGTTTTCTAGCTTATATTTTAATTTCCTGAGTA
ATTTGTACTGACTTGTTTTAGGAAGTCACTAGTGACAAGTGAATTGGAAT
AAAATATTATCTTTAAAAGAATGCAAGTCAAACTCACTCTAGTACAAATA
TTTCTGTTGAGATAAATTTCTTTGATACTGTTCATAGAAACCAATGTGAG
AGACCTTATAGGTATAAAAAATTTATAGATGGATATAAATAAACAGATAA
AAGAGATAATTGTGTCACTTTTTTTATCCTTTGGAGCCTAGCATTAAGTG
TTTGCCCACCCTTGCTGAATTTAACATGTTTTAGTCATGGAGTCATTGAC
CATGAGCTACACTGAAGTATACTTTTCCTATTTTATGTAAAAGTATCCTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_h18.b1 MSMg01no270_h18.b1 CHROMAT_FILE:
MSMg01no270_h18.b1 PHD_FILE: MSMg01no270_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:08 2005
         (318 letters)



>mm_chr1_136701005_136701722
          Length = 718

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcacaataatgggccttttagatggagcctataattccagcttgttgtagaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattctcacaataatgggccttttagatggagcctataattccagcttgttgtagaat 459

                                                                       
Query: 64  taactagtcttaaggaactgttttcacattgaaagtgaatcaagacttctttgtaagtcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 taactagtcttaaggaactgttttcacattgaaagtgaatcaagacttctttgtaagtcc 399

                                                                       
Query: 124 ttttcaactgcattcattaaactgacccccccaccccaagtagatgatcacttttgctta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttttcaactgcattcattaaactgacccccccaccccaagtagatgatcacttttgctta 339

                                                                       
Query: 184 tttaacttcacaaaatacgtgtttggaataaaagagatatcgaaacagccaaggcaaatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tttaacttcacaaaatacgtgtttggaataaaagagatatcgaaacagccaaggcaaatg 279

                                                                       
Query: 244 agtcattagttggaagtagttaaggggaaaagtatgaattccatgtgagaagggggggag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agtcattagttggaagtagttaaggggaaaagtatgaattccatgtgagaagggggggag 219

                          
Query: 304 tgggatagagtttcc 318
           |||||||||||||||
Sbjct: 218 tgggatagagtttcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_h18.g1 MSMg01no270_h18.g1 CHROMAT_FILE:
MSMg01no270_h18.g1 PHD_FILE: MSMg01no270_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:08 2005
         (643 letters)



>mm_chr1_136516524_136517566
          Length = 1043

 Score = 1236 bits (639), Expect = 0.0
 Identities = 642/643 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagagggtgttgggtcccctgggactacacttacatgtggggcctgggaatcaagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagagggtgttgggtcccctgggactacacttacatgtggggcctgggaatcaagcct 260

                                                                       
Query: 61  gggtcctctgagccacctccccaagcacagttatataaatctttctttgacaatttcccc 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtcctctgagccacctccccaaggacagttatataaatctttctttgacaatttcccc 320

                                                                       
Query: 121 aacttcttctcccactccttagacacctctagtgggtcccctctcttttatttctaaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttcttctcccactccttagacacctctagtgggtcccctctcttttatttctaaccc 380

                                                                       
Query: 181 atagacctattcgtgacttactgaatcagaatgtctgggatgagaaccaggaaactgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagacctattcgtgacttactgaatcagaatgtctgggatgagaaccaggaaactgtgt 440

                                                                       
Query: 241 ataagtaaatgggctttccacatgattcttatatgtgctgatgttttaagaaacattggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataagtaaatgggctttccacatgattcttatatgtgctgatgttttaagaaacattggg 500

                                                                       
Query: 301 ttttctagcttatattttaatttcctgagtaatttgtactgacttgttttaggaagtcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttctagcttatattttaatttcctgagtaatttgtactgacttgttttaggaagtcac 560

                                                                       
Query: 361 tagtgacaagtgaattggaataaaatattatctttaaaagaatgcaagtcaaactcactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtgacaagtgaattggaataaaatattatctttaaaagaatgcaagtcaaactcactc 620

                                                                       
Query: 421 tagtacaaatatttctgttgagataaatttctttgatactgttcatagaaaccaatgtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtacaaatatttctgttgagataaatttctttgatactgttcatagaaaccaatgtga 680

                                                                       
Query: 481 gagaccttataggtataaaaaatttatagatggatataaataaacagataaaagagataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagaccttataggtataaaaaatttatagatggatataaataaacagataaaagagataa 740

                                                                       
Query: 541 ttgtgtcactttttttatcctttggagcctagcattaagtgtttgcccacccttgctgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgtgtcactttttttatcctttggagcctagcattaagtgtttgcccacccttgctgaa 800

                                                      
Query: 601 tttaacatgttttagtcatggagtcattgaccatgagctacac 643
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttaacatgttttagtcatggagtcattgaccatgagctacac 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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