Query= MSMg01no270_j08.b1 MSMg01no270_j08.b1 CHROMAT_FILE:
MSMg01no270_j08.b1 PHD_FILE: MSMg01no270_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:16 2005
(323 letters)
>mm_chr1_62922968_62923690
Length = 723
Score = 561 bits (290), Expect = e-164
Identities = 315/330 (95%), Gaps = 11/330 (3%)
Strand = Plus / Minus
Query: 5 gaattcctcatgtctttatctctcacaaccctcgcttccattcatctatgaagtccacta 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 330 gaattcctcatgtctttatctctcacaaccctcggttccattcatctatgaagtccacta 271
Query: 65 ggaagtgggtttcctccacgatctattagcaagggtgatgtcaacaggtagattcttagc 124
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggaagtgggtttcctccaggatctattagcaagggtgatgtcaacaggtagattcttagc 211
Query: 125 tact-----------ggcacacagctattcacaactcccaaatataatcccagcatccac 173
|||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 210 tactgggcctccaaaggcacacagctattcacaactcccaaatataatcccggcatccac 151
Query: 174 atttctctcctaagctctggatgcacattctaccaacaagacaaacacccttcagtggtc 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 atttctctcctaagctctggatgcacattctaccaacaagacaaacacccttcagtggtc 91
Query: 234 atttacaaaggagtatgctcagaacaaccttacctttcttctaactatggccctctctgg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 atttacaaaggagtatgctcagaacaaccttacctttcttctaactatggccctctctgg 31
Query: 294 agtgtccatatccgtgaatcacgtaagtat 323
|||||||||||| |||||||||||||||||
Sbjct: 30 agtgtccatatctgtgaatcacgtaagtat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_j08.g1 MSMg01no270_j08.g1 CHROMAT_FILE:
MSMg01no270_j08.g1 PHD_FILE: MSMg01no270_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:16 2005
(496 letters)
>mm_chr1_62757225_62758120
Length = 896
Score = 948 bits (490), Expect = 0.0
Identities = 493/494 (99%), Gaps = 1/494 (0%)
Strand = Plus / Plus
Query: 1 tcagctcagcaaagggatgtctccttttcacattcttttcctcccttcttctattctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagctcagcaaagggatgtctccttttcacattcttttcctcccttcttctattctcca 260
Query: 61 tgttcttggttccactcctcccccattccaaatctgtcttttttctttctgttcctttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcttggttccactcctcccccattccaaatctgtcttttttctttctgttcctttcc 320
Query: 121 cctccctttccatccttcctggctgaaagtatgctcagcagaaaatgctgtagttaaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctccctttccatccttcctggctgaaagtatgctcagcagaaaatgctgtagttaaggc 380
Query: 181 actcttccgaatttgtaataacctctactcaggcattaagtgcccctcagcaactgaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcttccgaatttgtaataacctctactcaggcattaagtgcccctcagcaactgaact 440
Query: 241 caaaagaaagtagtcagaaagacaaaatggcttttacccagcaagactcttaatgatccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaagaaagtagtcagaaagacaaaatggcttttacccagcaagactcttaatgatccc 500
Query: 301 agttccctctgggtcttcaaaaaggggcatggtctaatccagaaaaagagagacagggtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttccctctgggtcttcaaaaaggggcatggtctaatccagaaaaagagagacagggtg 560
Query: 361 aatgggaataaaataaaaattctacccatagcttgcagtgtacatggctccagagagaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgggaataaaataaaaattctacccatagcttgcagtgtacatggctccagagagaga 620
Query: 421 gagagagagagagagagagagagagagagagagagagag-agaggagaggagaggagagg 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 gagagagagagagagagagagagagagagagagagagaggagaggagaggagaggagagg 680
Query: 480 agaggagaggagag 493
||||||||||||||
Sbjct: 681 agaggagaggagag 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
