Query= MSMg01no270_k03.b1 MSMg01no270_k03.b1 CHROMAT_FILE:
MSMg01no270_k03.b1 PHD_FILE: MSMg01no270_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:20 2005
(694 letters)
>mm_chr1_178551943_178553036
Length = 1094
Score = 1247 bits (645), Expect = 0.0
Identities = 681/693 (98%), Gaps = 4/693 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaggtgaatgtgggctctgattacagctcagtccgtgtggcttttgctttacaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggtgaatgtgggctctgattacagctcagtccgtgtggcttttgctttacaa 263
Query: 64 tcacaggacctgagttagctcctctagaacccacaaggctaagcaaagcagcagcatgca 123
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcacaggatctgagttagctcctctagaacccacaaggctaagcaaagcagcagcatgca 323
Query: 124 tatgccatcccagtgctgggaaggcagggacaggtggattcctgggcttgttgacctgaa 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 tatgccatcccagtgctgggaaggcagggacaggtggactcctgggcttgttgacctgaa 383
Query: 184 aatttagccttttttttttaatcaagttcaaggccaaggacaggatccatatgaagaaaa 243
||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 aatttagccttcttttttt-atcaagttcaaggccaatgacaggatccatatgaagaaaa 442
Query: 244 agaaagaaaggggggggggaacaggtggatgagcataca-acagagcaaattccaagcca 302
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 443 agaaagaaaggggggggggaacaggtggatgagcata-agacagagcaaattccaagcca 501
Query: 303 aaggagaaatccacagaccagtgggaagcaaggatgaatgagtcagccttttaaagaacg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaggagaaatccacagaccagtgggaagcaaggatgaatgagtcagccttttaaagaacg 561
Query: 363 ctgttgtatatgtcttctcccacatgcagaggtaaatgt-aaaaatcagaaaatgagtca 421
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||
Sbjct: 562 ctgttgtatatgtcttctcccacatgcagaggtaaatgtaaaaaatcggaaaatgaatca 621
Query: 422 cgcccttgcttggcagcttttaaaaactgaatttatattctctgcaatctcacccccaag 481
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 622 cgcccttgtttggcagcttttaaaaagtgaatttatattctctgcaatctcacccccaag 681
Query: 482 taagctggcttgatataagtcagcaaagcaacccggcaccgtttcaatgatgagtagatg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taagctggcttgatataagtcagcaaagcaacccggcaccgtttcaatgatgagtagatg 741
Query: 542 tgaatgaggctctcttaaaggtgaaagactggcctggcctgagacacagccctactggca 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgaatgaggctctcttaaaggtgaaagactggcctggcctgagacacagccctactggca 801
Query: 602 cccttgttcccaaaaactgcaacttctgcatgatcctgagggagcgatccagcccaaact 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cccttgttcccaaaaactgcaacttctgcatgatcctgagggagcgatccagcccaaact 861
Query: 662 cacttgcagaaagaagcaatctggccatgagaa 694
|||||||||||||||||||||||||||||||||
Sbjct: 862 cacttgcagaaagaagcaatctggccatgagaa 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_k03.g1 MSMg01no270_k03.g1 CHROMAT_FILE:
MSMg01no270_k03.g1 PHD_FILE: MSMg01no270_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:20 2005
(666 letters)
>mm_chr1_178704196_178705261
Length = 1066
Score = 1265 bits (654), Expect = 0.0
Identities = 663/666 (99%)
Strand = Plus / Minus
Query: 1 tctctccttttcctcattagggtgcagcacagaggccaagcatgtggagggacagtctgc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 866 tctctccttttcctcattagggtgcagcacagaggccaagcacgtggagggacagtctgc 807
Query: 61 ggctgcaagtgaagaagcactttttcccttctgtagggagccaagttattttgaaattcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ggctgcaagtgaagaagcactttttcccttctgtagggagccaagttattttgaaattcc 747
Query: 121 tacaaaagaattccagcagccatcacaaatagcagagagcactattcatgagattccaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tacaaaagaattccagcagccatcacaaatagcagagagcactattcatgagattccaac 687
Query: 181 aaaagacacaccaagttcccatacagcaggtgcagggcatgcttcatttaccattgaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aaaagacacaccaagttcccatacagcaggtgcagggcatgcttcatttaccattgaatt 627
Query: 241 tgatgacagtacgccaggaaaagtaactattagagaccatgtgacaaaattcacttctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgatgacagtacgccaggaaaagtaactattagagaccatgtgacaaaattcacttctga 567
Query: 301 ccagcgccacaagtcaaagaaggcctctccaggaactcaagacttgccaggaattcagac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ccagcgccacaagtcaaagaaggcctctccaggaactcaagacttgccaggaattcagac 507
Query: 361 aggaatgatggcaccagaaaataaagtagctgactggctagcccaaaacaaccctcctca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aggaatgatggcaccagaaaataaagtagctgactggctagcccaaaacaaccctcctca 447
Query: 421 gatggtgtgggaaagaacagaggaggattccaagagcattaaaagtgatgttcctgtgta 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatggtgtgggaaagaacagaggaggattccaagagcattaaaagtgatgttcctgtgta 387
Query: 481 cttgaaaaggttgaaaggtaaaatgatcttcagagattcctattgtatcataagttacca 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 386 cttgaaaaggttgaaaggtaaagtgatcttcagagattcctattgtatcataagttacca 327
Query: 541 gacagactactgttacttaattatacactggaaaatatctttttcaaaatttacgtttaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gacagactactgttacttaattatacactggaaaatatctttttcaaaatttacgtttaa 267
Query: 601 ttttaaagctcaagagcaaacagcactgtttatgtccagatttctcattcatattagctt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttttaaagctcaagagcaaacagcactgtttatgtccagatttctcattcatattagctt 207
Query: 661 ttcttt 666
||||||
Sbjct: 206 ttcttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
