BAC Information

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BAC

Clone NameMSMg01-270K15
Chromosome1 (Build37)
Map Location 70,791,061 - 70,857,914
singlet/doubletdoublet
Overlap geneA830006F12Rik, LOC100043210
Upstream geneSpag16
Downstream geneEG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270K15.T7 (MSMg01no270_k15.b1)MSMg01-270K15.TJ (MSMg01no270_k15.g1)
ACCAG410436AG410437
length723733
length of high quality
(start - end)		641 (44 - 684)607 (77 - 683)
definitionCHROMAT_FILE: MSMg01no270_k15.b1 PHD_FILE: MSMg01no270_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:22 2005CHROMAT_FILE: MSMg01no270_k15.g1 PHD_FILE: MSMg01no270_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,857,278 - 70,857,914)(70,791,061 - 70,791,667)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACATATCTTTATATACAGAAAAGGAAACAAATTATAGAGCAGTGCT
GGGAATGTTCCATAAATCTGGGTGCAGATTCTCCACGCAGGCTCGCGTGC
TACTGTTTATTTTCATTATTAGGCGGAATCTCGAGTAAATCCATGTAAAA
ACCACACTGATTCCGAACACGGAGAGCAGTGCCAATAGGTAAACAATTTC
AGGGCAAACTGATGCTTTATTCTCTTTCCTGGAAGTCAGGCAAACATTTT
TTTCCAGATGGCCACGGTGCATATGGCCGTGAGTACTGTGGTGGCCAAAA
TAGGAAACGGGAATGTGGTTCTTTCCAATTAAATCAATTCTGTCCTTGAG
AGAAGAAATTTCACAAAGTGTCTGTGAGGATGAGAGACACACACACAAAG
TAGCTTTCATGCCCACCCAGACATCTCTAACTAGTTATGATCTCCTTGTT
TGGTGTTCAGGCCAGTTGGCTTTACTTTTGGATTTTAAGGAAAGAAGGCC
ATGAGTTTAATCATGGGCTGGCAATTGGCAGGTCAAAACAAGTTGTGTTT
ATCCTCTTTCTTTCTAGAACATTGAGTGAGTTCTCCCTGATTGTTTTCTC
CTGTGTAAAGCGGGAGTCACTGCCCTAGGCTGCCCAACAGATTGCTGTGG
AGATAAAATAATGACTGTGATGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATGGCCTCATATTCTCCCGTAA
CTCCATTAGATTTTGTTTTAACGCTCCAGTCAGTGACTGCTTATCAGCTG
ATATGAACAACCTGTCCTTTCCAGTGGTATCAGGAACATTTTGAAGTTAT
ACAACTGCGTAGTTTTTTTCTTGTTGCATAAATGTGTGGTCCATGGAGCA
TCTTCATCGCAGAGACATCCAGGCTCCAATGAGCATGCTCAGTCCTGCAG
TCATAGGATGGTCACATACCACAAGTAGCGTCACAGCAGCTTGTTGAAAA
GTGATACCAGGCTGCTGTTTCTCTCGAGTATTTCACAGGTATCGGTGTGA
CACTTCACAAATCTTCACTGTGACCTTTCTCTATACTTTCAGATTCTCAT
CTGAAACTCTTAGTAGCAACTAAAAAGAGGAAAAAAACCTCCCTGACATT
TTCTTTGTAAGTTTGCTTTGCCTATTCAAACAATACACCTTCTTCTGCAA
CTGAAGTATACGTTAGGTTAGACTTGCCTTATCTTTTTATTTTGTTTTTC
TGGAACCTAGTCACATTTCAGAAAAGCTACATTTTGGTCATGGGATTTCT
TAAAAATTCTCTGGTTCTACATATCATCCAGTTATCAGAATATGTAGTAT
CAAATCACAGTGCAAAATGTCATTGCAGTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_k15.b1 MSMg01no270_k15.b1 CHROMAT_FILE:
MSMg01no270_k15.b1 PHD_FILE: MSMg01no270_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:22 2005
         (641 letters)



>mm_chr1_70857074_70858114
          Length = 1041

 Score = 1185 bits (613), Expect = 0.0
 Identities = 631/637 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacatatctttatatacagaaaaggaaacaaattatagagcagtgctgggaatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaattcaacatatctttatatacagaaaaggaaacaaattatagagcagtgctgggaatg 782

                                                                       
Query: 65  ttccataaatctgggtgcagattctccacgcaggctcgcgtgctactgtttattttcatt 124
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 781 ttccacaaatctgggtgcagattctccacgcaggctcgtgtgctactgtttattttcatt 722

                                                                       
Query: 125 attaggcggaatctcgagtaaatccatgtaaaaaccacactgattccgaacacggagagc 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 721 attaggcggaatctcgagtaaatccatgtaaaaaccacactgattctgaacacggagagc 662

                                                                       
Query: 185 agtgccaataggtaaacaatttcagggcaaactgatgctttattctctttcctggaagtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agtgccaataggtaaacaatttcagggcaaactgatgctttattctctttcctggaagtc 602

                                                                       
Query: 245 aggcaaacatttttttccagatggccacggtgcatatggccgtgagtactgtggtggcca 304
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aggcaagcatttttttccagatggccacggtgcatatggccgtgagtactgtggtggcca 542

                                                                       
Query: 305 aaataggaaacgggaatgtggttctttccaattaaatcaattctgtccttgagagaagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaataggaaacgggaatgtggttctttccaattaaatcaattctgtccttgagagaagaa 482

                                                                       
Query: 365 atttcacaaagtgtctgtgaggatgagagacacacacacaaagtagctttcatgcccacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atttcacaaagtgtctgtgaggatgagagacacacacacaaagtagctttcatgcccacc 422

                                                                       
Query: 425 cagacatctctaactagttatgatctccttgtttggtgttcaggccagttggctttactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cagacatctctaactagttatgatctccttgtttggtgttcaggccagttggctttactt 362

                                                                       
Query: 485 ttggattttaaggaaagaaggccatgagtttaatcatgggctggcaattggcaggtcaaa 544
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgggattttaaggaaagaaggccatgagtttaatcatgggctggcaattggcaggtcaaa 302

                                                                       
Query: 545 acaagttgtgtttatcctctttctttctagaacattgagtgagttctccctgattgtttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acaagttgtgtttatcctctttctttctagaacattgagtgagttctccctgattgtttt 242

                                                
Query: 605 ctcctgtgtaaagcgggagtcactgccctaggctgcc 641
           ||||||||||||| |||||||||||||||||||||||
Sbjct: 241 ctcctgtgtaaagtgggagtcactgccctaggctgcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no270_k15.g1 MSMg01no270_k15.g1 CHROMAT_FILE:
MSMg01no270_k15.g1 PHD_FILE: MSMg01no270_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:23 2005
         (607 letters)



>mm_chr1_70790861_70791867
          Length = 1007

 Score = 1158 bits (599), Expect = 0.0
 Identities = 605/607 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatggcctcatattctcccgtaactccattagattttgttttaacgctccagtcagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatggcctcatattctcccgtaactccattagattttgttttaacgctccagtcagtga 260

                                                                       
Query: 61  ctgcttatcagctgatatgaacaacctgtcctttccagtggtatcaggaacattttgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcttatcagctgatatgaacaacctgtcctttccagtggtatcaggaacattttgaag 320

                                                                       
Query: 121 ttatacaactgcgtagtttttttcttgttgcataaatgtgtggtccatggagcatcttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatacaactgcgtagtttttttcttgttgcataaatgtgtggtccatggagcatcttca 380

                                                                       
Query: 181 tcgcagagacatccaggctccaatgagcatgctcagtcctgcagtcataggatggtcaca 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tcgcagagacatccaggctccaatgaggatgctcagtcctgcagtcataggatggtcaca 440

                                                                       
Query: 241 taccacaagtagcgtcacagcagcttgttgaaaagtgataccaggctgctgtttctctcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taccacaagtagcgtcacagcagcttgttgaaaagtgataccaggctgctgtttctctcg 500

                                                                       
Query: 301 agtatttcacaggtatcggtgtgacacttcacaaatcttcactgtgacctttctctatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtatttcacaggtatcggtgtgacacttcacaaatcttcactgtgacctttctctatac 560

                                                                       
Query: 361 tttcagattctcatctgaaactcttagtagcaactaaaaagaggaaaaaaacctccctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcagattctcatctgaaactcttagtagcaactaaaaagaggaaaaaaacctccctga 620

                                                                       
Query: 421 cattttctttgtaagtttgctttgcctattcaaacaatacaccttcttctgcaactgaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattttctttgtaagtttgctttgcctattcaaacaatacaccttcttctgcaactgaag 680

                                                                       
Query: 481 tatacgttaggttagacttgccttatctttttattttgtttttctggaacctagtcacat 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 tatacgttaggttagacttgccttatctttttattttgtttttctgtaacctagtcacat 740

                                                                       
Query: 541 ttcagaaaagctacattttggtcatgggatttcttaaaaattctctggttctacatatca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcagaaaagctacattttggtcatgggatttcttaaaaattctctggttctacatatca 800

                  
Query: 601 tccagtt 607
           |||||||
Sbjct: 801 tccagtt 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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