BAC Information

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BAC

Clone NameMSMg01-270M19
Chromosome1 (Build37)
Map Location 32,036,746 - 32,186,268
singlet/doubletdoublet
Overlap geneLOC100041238
Upstream geneLOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
Downstream geneKhdrbs2, EG408191, EG633498, LOC213711, LOC100040828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270M19.T7 (MSMg01no270_m19.b1)MSMg01-270M19.TJ (MSMg01no270_m19.g1)
ACCAG410533AG410534
length735761
length of high quality
(start - end)
658 (41 - 698)652 (69 - 720)
definitionCHROMAT_FILE: MSMg01no270_m19.b1 PHD_FILE: MSMg01no270_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:33 2005CHROMAT_FILE: MSMg01no270_m19.g1 PHD_FILE: MSMg01no270_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,036,746 - 32,037,398)(32,185,777 - 32,186,268)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTTATGTCCACCCATCTTTTAAAGATAATATCCAAAGATAATATATAAT
ATTAGGTCAAAAAAAGAAACCCTAACACCATTTATGAGATAGGCTGAAAC
TATAGAATATATATATATATAATCACTTCCTCTATAAAAATTCAGTTATC
CATTTTTGTAGTTATTCACCAGAAAGAATTAGTATTTAGACTGGAGTTTC
AGTCACATTTTCTAGCAGAATGTCCAGGCAGAAGTTAGGAGAACTGATTA
GAGAAACCAGAGCAGTCTAATGGCATATTTTGCTTCAGAAATAATGACCC
ATCCTGTTTATGGCCTAGGAAATAAAGGTACTGTTCACTCTCAAGTCTCT
TGCACCTAAACAACCTAGCTATTCTCTATCTCCTTTCTTCATCAACAACA
ATAAAGGTGTGTGTGAGAATAATGTAATTAGTTCATGTTATAAAATCTAC
AAGGGAAATAACAGAGTCATAGTGATATACTACCTAGGGTTATAGTAGTA
ATCTTTGGATATAGGGTATAAGAAATTGAGTCTGTCTGTCTGTCTATCTA
TCTATCTATATCATATATATATATATATATATATATATATATATATATGC
ATGCCTATGTCTGTCTATGTCTATGTCCGTGTCCGCGTCCGCGTCCGTGG
TCATGTCTGTGTCTGTGTCTATGTCTATGTCTGCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCCAGGTTGAGAAGAGGAAGCCTTGCTCACAA
AGGTAGTTCATCATTTTGCACCAAGCTCGGGGCTTTTCTGTAAATCAAAT
TTCAACTGTAGCAGCAGTTCAACATAGAGACACGTACATTTAAGTGTTTA
TACTCACAATAGTAGGGAAATAGAATCAGCCTAGATGTATATCAACTGAT
AATAGGTAATGAAAATGTGGTATATGTACACAATGGACTGAAAATAAAAA
GTAAGCCAAGAAATGTGAGAAGAAATACAGTCTCAGAAATACAAATGCTT
CATGCTCTTTCATACATATAAGATCTCTCTCTCTCTCTTTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTTTCTATATATTTGTGTAT
CTGTGAACATTAGAATAGGGACCATAAAATGGGGGGAAAGAGTTTTGAGG
GAAGGAAGAGGGCCATACAGCACATCGACATGAAAACAGAGAAAGGGCTA
CTGAGAGTAGTATGCTATAACTGGTCAAGGTGATGGGGATGAGGGTTGGG
AGATGAGAATCATTAACAATTTAAACTTCTATAAAGAAAACTAGTATTTA
GTATTAGTTAAGGAAAAGAAAACATAAAATTTGAACACTACAATAAAGTA
AATGTGAAGATAAAAAATAACGGGTGGTATCAATTTAAAAAGATTCTTGA
TGACAGGACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_m19.b1 MSMg01no270_m19.b1 CHROMAT_FILE:
MSMg01no270_m19.b1 PHD_FILE: MSMg01no270_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:33 2005
         (658 letters)



>mm_chr1_32036541_32037592
          Length = 1052

 Score = 1087 bits (562), Expect = 0.0
 Identities = 630/660 (95%), Gaps = 16/660 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattcagttatgtccacccatcttttaaagataatatccaaagataatatataatattag 65
           ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 206 aattcagttatgtccaggcatcttttaaagctaatatccaaagataatatataatattag 265

                                                                       
Query: 66  gtcaaaaaaagaaaccctaacaccatttatgagataggctgaaactatagaatatatata 125
           ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||  
Sbjct: 266 gtctaaaaaagaaaccctaacaccatttatgagataggctgaaactatagcatatata-- 323

                                                                       
Query: 126 tatataatcacttcctctataaaaattcagttatccatttttgtagttattcaccagaaa 185
              | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ---a-aatcacttcctctataaaaattcagttatccatttttgtagttattcaccagaaa 379

                                                                       
Query: 186 gaattagtatttagactggagtttcagtcacattttctagcagaatgtccaggcagaagt 245
           |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 380 gaattagtgtttagactggagtttcagtcacattttctagtagaatgtccaggcagaagt 439

                                                                       
Query: 246 taggagaactgattagagaaaccagagcagtctaatggcatattttgcttcagaaataat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taggagaactgattagagaaaccagagcagtctaatggcatattttgcttcagaaataat 499

                                                                       
Query: 306 gacccatcctgtttatggcctaggaaataaaggtactgttcactctcaagtctcttgcac 365
           ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gacccattctgtttatggtctaggaaataaaggtactgttcactctcaagtctcttgcac 559

                                                                       
Query: 366 ctaaacaacctagctattctctatctcctttcttcatcaacaacaataaaggtgtgtgtg 425
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 560 ctaaacaacctagctattctctatctcctttattcatcaacaacaataaaggtgtgtgtg 619

                                                                       
Query: 426 agaataatgtaattagttcatgttataaaatctacaagggaaataacagagtcatagtga 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agaataatgtaattagttcatgttataaaatctacaagggaaataacagagtcatagtga 679

                                                                       
Query: 486 tatactacctagggttatagtagtaatctttggatatagggtataagaaattgagtctgt 545
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 680 tatactacctagggttatagtagtaatctttggatatagggtataagaaattgagtttgt 739

                                                                       
Query: 546 ctgtctgtctatctatctat--c-------tatatcatatatatatatatatatatatat 596
           |||||| |||||||||||||  |       ||||| ||||||||||||||||||||||||
Sbjct: 740 ctgtctatctatctatctatatcatatatatatat-atatatatatatatatatatatat 798

                                                                       
Query: 597 atatatatatatgcatgcctatgtctgtctatgtctatgtccgtgtccgcgtccgcgtcc 656
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 799 atatatatatatgcatgcctatgtctgtctatgtctatgtccgtgtctgtgtccgcgtcc 858



 Score = 76.1 bits (39), Expect = 8e-18
 Identities = 42/43 (97%), Gaps = 1/43 (2%)
 Strand = Plus / Minus

                                                      
Query: 567 tatatcatatatatatatatatatatatatatatatatatatg 609
           ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 803 tatat-atatatatatatatatatatatatatatatatatatg 762



 Score = 74.2 bits (38), Expect = 3e-17
 Identities = 41/42 (97%), Gaps = 1/42 (2%)
 Strand = Plus / Minus

                                                     
Query: 567 tatatcatatatatatatatatatatatatatatatatatat 608
           ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 809 tatat-atatatatatatatatatatatatatatatatatat 769



 Score = 72.3 bits (37), Expect = 1e-16
 Identities = 37/37 (100%)
 Strand = Plus / Minus

                                                
Query: 572 catatatatatatatatatatatatatatatatatat 608
           |||||||||||||||||||||||||||||||||||||
Sbjct: 811 catatatatatatatatatatatatatatatatatat 775



 Score = 62.6 bits (32), Expect = 1e-13
 Identities = 38/40 (95%), Gaps = 2/40 (5%)
 Strand = Plus / Minus

                                                   
Query: 567 tatatcatatatatatatatatatatatatatat-atata 605
           ||||| |||||||||||||||||||||||||||| |||||
Sbjct: 795 tatat-atatatatatatatatatatatatatatgatata 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 111
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 6
Length of query: 658
Length of database: 1052
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1042
Effective search space:   675216
Effective search space used:   675216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no270_m19.g1 MSMg01no270_m19.g1 CHROMAT_FILE:
MSMg01no270_m19.g1 PHD_FILE: MSMg01no270_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:33 2005
         (652 letters)



>mm_chr1_32185217_32186268
          Length = 1052

 Score =  882 bits (456), Expect = 0.0
 Identities = 488/508 (96%), Gaps = 16/508 (3%)
 Strand = Plus / Minus

                                                                        
Query: 145  tagggaaatagaatcagcctagatgtatatcaactgataataggtaatgaaaatgtggta 204
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1052 tagggaaatagaatcagcctagatatatatcaactgataataggtaatgaaaatgtggta 993

                                                                        
Query: 205  tatgtacacaatggactgaaaataaaaagtaagccaagaaatgtgagaagaaatacagtc 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  tatgtacacaatggactgaaaataaaaagtaagccaagaaatgtgagaagaaatacagtc 933

                                                                        
Query: 265  tcagaaatacaaatgcttcatgctctttcatacatataagatctctctctctctctttct 324
            |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||   
Sbjct: 932  tcagaaatacaaatgcttcatgctctttcatacatataaga--tctctctctctctt--- 878

                                                                        
Query: 325  ctctctctctctctctctctctctctctctctctctgtgtttctatatatttgtgtatct 384
                       ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 877  -----------tctctctctctctctctctctctgtgtgtttctatatatttgtgtatct 829

                                                                        
Query: 385  gtgaacattagaatagggaccataaaatggggggaaagagttttgagggaaggaagaggg 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828  gtgaacattagaatagggaccataaaatggggggaaagagttttgagggaaggaagaggg 769

                                                                        
Query: 445  ccatacagcacatcgacatgaaaacagagaaagggctactgagagtagtatgctataact 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768  ccatacagcacatcgacatgaaaacagagaaagggctactgagagtagtatgctataact 709

                                                                        
Query: 505  ggtcaaggtgatggggatgagggttgggagatgagaatcattaacaatttaaacttctat 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708  ggtcaaggtgatggggatgagggttgggagatgagaatcattaacaatttaaacttctat 649

                                                                        
Query: 565  aaagaaaactagtatttagtattagttaaggaaaagaaaacataaaatttgaacactaca 624
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 648  aaagaaaactagtatttagtattagttaaggaaaagaaaacataaaatttgaacacaaca 589

                                        
Query: 625  ataaagtaaatgtgaagataaaaaataa 652
            ||||||||||||||||||||| ||||||
Sbjct: 588  ataaagtaaatgtgaagataagaaataa 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)