Query= MSMg01no270_m19.b1 MSMg01no270_m19.b1 CHROMAT_FILE:
MSMg01no270_m19.b1 PHD_FILE: MSMg01no270_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:33 2005
(658 letters)
>mm_chr1_32036541_32037592
Length = 1052
Score = 1087 bits (562), Expect = 0.0
Identities = 630/660 (95%), Gaps = 16/660 (2%)
Strand = Plus / Plus
Query: 6 aattcagttatgtccacccatcttttaaagataatatccaaagataatatataatattag 65
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 206 aattcagttatgtccaggcatcttttaaagctaatatccaaagataatatataatattag 265
Query: 66 gtcaaaaaaagaaaccctaacaccatttatgagataggctgaaactatagaatatatata 125
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 266 gtctaaaaaagaaaccctaacaccatttatgagataggctgaaactatagcatatata-- 323
Query: 126 tatataatcacttcctctataaaaattcagttatccatttttgtagttattcaccagaaa 185
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ---a-aatcacttcctctataaaaattcagttatccatttttgtagttattcaccagaaa 379
Query: 186 gaattagtatttagactggagtttcagtcacattttctagcagaatgtccaggcagaagt 245
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 380 gaattagtgtttagactggagtttcagtcacattttctagtagaatgtccaggcagaagt 439
Query: 246 taggagaactgattagagaaaccagagcagtctaatggcatattttgcttcagaaataat 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 taggagaactgattagagaaaccagagcagtctaatggcatattttgcttcagaaataat 499
Query: 306 gacccatcctgtttatggcctaggaaataaaggtactgttcactctcaagtctcttgcac 365
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gacccattctgtttatggtctaggaaataaaggtactgttcactctcaagtctcttgcac 559
Query: 366 ctaaacaacctagctattctctatctcctttcttcatcaacaacaataaaggtgtgtgtg 425
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 560 ctaaacaacctagctattctctatctcctttattcatcaacaacaataaaggtgtgtgtg 619
Query: 426 agaataatgtaattagttcatgttataaaatctacaagggaaataacagagtcatagtga 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agaataatgtaattagttcatgttataaaatctacaagggaaataacagagtcatagtga 679
Query: 486 tatactacctagggttatagtagtaatctttggatatagggtataagaaattgagtctgt 545
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 680 tatactacctagggttatagtagtaatctttggatatagggtataagaaattgagtttgt 739
Query: 546 ctgtctgtctatctatctat--c-------tatatcatatatatatatatatatatatat 596
|||||| ||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct: 740 ctgtctatctatctatctatatcatatatatatat-atatatatatatatatatatatat 798
Query: 597 atatatatatatgcatgcctatgtctgtctatgtctatgtccgtgtccgcgtccgcgtcc 656
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 799 atatatatatatgcatgcctatgtctgtctatgtctatgtccgtgtctgtgtccgcgtcc 858
Score = 76.1 bits (39), Expect = 8e-18
Identities = 42/43 (97%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 567 tatatcatatatatatatatatatatatatatatatatatatg 609
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 803 tatat-atatatatatatatatatatatatatatatatatatg 762
Score = 74.2 bits (38), Expect = 3e-17
Identities = 41/42 (97%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 567 tatatcatatatatatatatatatatatatatatatatatat 608
||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 809 tatat-atatatatatatatatatatatatatatatatatat 769
Score = 72.3 bits (37), Expect = 1e-16
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 572 catatatatatatatatatatatatatatatatatat 608
|||||||||||||||||||||||||||||||||||||
Sbjct: 811 catatatatatatatatatatatatatatatatatat 775
Score = 62.6 bits (32), Expect = 1e-13
Identities = 38/40 (95%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 567 tatatcatatatatatatatatatatatatatat-atata 605
||||| |||||||||||||||||||||||||||| |||||
Sbjct: 795 tatat-atatatatatatatatatatatatatatgatata 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 111
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 6
Length of query: 658
Length of database: 1052
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1042
Effective search space: 675216
Effective search space used: 675216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_m19.g1 MSMg01no270_m19.g1 CHROMAT_FILE:
MSMg01no270_m19.g1 PHD_FILE: MSMg01no270_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:33 2005
(652 letters)
>mm_chr1_32185217_32186268
Length = 1052
Score = 882 bits (456), Expect = 0.0
Identities = 488/508 (96%), Gaps = 16/508 (3%)
Strand = Plus / Minus
Query: 145 tagggaaatagaatcagcctagatgtatatcaactgataataggtaatgaaaatgtggta 204
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1052 tagggaaatagaatcagcctagatatatatcaactgataataggtaatgaaaatgtggta 993
Query: 205 tatgtacacaatggactgaaaataaaaagtaagccaagaaatgtgagaagaaatacagtc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 tatgtacacaatggactgaaaataaaaagtaagccaagaaatgtgagaagaaatacagtc 933
Query: 265 tcagaaatacaaatgcttcatgctctttcatacatataagatctctctctctctctttct 324
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 932 tcagaaatacaaatgcttcatgctctttcatacatataaga--tctctctctctctt--- 878
Query: 325 ctctctctctctctctctctctctctctctctctctgtgtttctatatatttgtgtatct 384
||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 877 -----------tctctctctctctctctctctctgtgtgtttctatatatttgtgtatct 829
Query: 385 gtgaacattagaatagggaccataaaatggggggaaagagttttgagggaaggaagaggg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gtgaacattagaatagggaccataaaatggggggaaagagttttgagggaaggaagaggg 769
Query: 445 ccatacagcacatcgacatgaaaacagagaaagggctactgagagtagtatgctataact 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ccatacagcacatcgacatgaaaacagagaaagggctactgagagtagtatgctataact 709
Query: 505 ggtcaaggtgatggggatgagggttgggagatgagaatcattaacaatttaaacttctat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ggtcaaggtgatggggatgagggttgggagatgagaatcattaacaatttaaacttctat 649
Query: 565 aaagaaaactagtatttagtattagttaaggaaaagaaaacataaaatttgaacactaca 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 648 aaagaaaactagtatttagtattagttaaggaaaagaaaacataaaatttgaacacaaca 589
Query: 625 ataaagtaaatgtgaagataaaaaataa 652
||||||||||||||||||||| ||||||
Sbjct: 588 ataaagtaaatgtgaagataagaaataa 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|