BAC Information

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BAC

Clone NameMSMg01-271F14
Chromosome1 (Build37)
Map Location 129,716,658 - 129,716,934
singlet/doubletsinglet
Overlap geneYsk4
Upstream geneE030049G20Rik, LOC383559, Mgat5, LOC667090, Tmem163, Acmsd, Ccnt2
Downstream geneRab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271F14.T7 (MSMg01no271_f14.b1)MSMg01-271F14.TJ (MSMg01no271_f14.g1)
ACCAG410928AG410929
length799747
length of high quality
(start - end)
269 (43 - 311)235 (120 - 354)
definitionCHROMAT_FILE: MSMg01no271_f14.b1 PHD_FILE: MSMg01no271_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:12 2005CHROMAT_FILE: MSMg01no271_f14.g1 PHD_FILE: MSMg01no271_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTACCTGACCTGACCCTTCTCTTCCCTACTACCTGCACTTAGAACAT
GTGCAACTGAAAGTCACAGAAAAACCCAAACCTGCTTCAGGGGGAGTATG
TTTTTTTGCTTTATGTATTTGAAGGGTGTGGAGATGATTTGCTGTTGGGA
CATGAGGTTTTAGAGACATAACCATTTCTTCAGGAGCTACTGCTGTCTCC
CAGGTCTGCCCTGGTCCCTACTCTTGGGCGGTGACCCTCTGTTCTAACCT
CTCATCGCTCCATGTTTTTTCTCTGGACTAGCTATTCTTCTCCTCACTTC
CATATTTTTTTTTTTTCCCCCCCCCCCCCTCCCCCAAATTATGTGTTGAT
TCAGTTCACAGGTCACGGCCCCAGACCAAAAAAAGAAGAAGAAGGTCGAG
GGTGGGGAGTTTTCATTCATTTGCTTCTTAGGTTATTTTGCTTTCTTGGA
AATACAAAAATAATGGATGCCGGTTGTTTATTTCACTGGTATCCCTTACT
AGTTATGAGTATCCATCTTTAACCCCTTGTCCGTGCTTCCTTGACATTTT
TTACGTAGATGTTGTCGTATCCTTTATACCATCTACATCTATTATATCCT
TTACGTTTTTCTTGTCTTTTCATGCTCTTCCACTTCCGACTATCCCAGTC
TTCGTTTTCCACTTTATCTATTGTCCTCCCATCACATACTTTCTACTTAT
ACTCTAAAGATTGCATATGAGTCATCACCTCACTTTAAACTGTGTTCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTAGTTTCTATGGTCAGCCTTGGGGTGAAATGG
AGACAGGAAGATTAACCCAAGGGAACAAGGGGAACCTTTACTTTGCTCTA
ATGCCTTCTGGAAACCTTCCTCTCAGAGTGCCTAGCACGCCAAAGTAACA
TGCTTTGGGAAATCATTTTCTGACGAAGCATCACAAACAGCATCCTGTTA
AAAAAAAAAAAATCAACAGCTGAGCATGGTGGCATGTGCCTTTAATCCCA
GCACTCGGGAGGCAGAGTCAGGCCAATCTTTGTGAGTTCAAGGCCAGCCT
GGTTNAATAGNTTGCTNTACGANCCTCAGGGCTACAAAATAGAGAGACCC
TGTCTCAACCTCCCACCTAAAAAAATATAACAAAGACTTAGCTGAACTAG
CTAACAATCGTCCTTGAACAGGCCTCACACAAAGCAAGCAGGACTTTGGA
GAAGGGTGTTCTGTGAGCAGACAGCCCAGTAGACATGGAAGTGAGTAAAG
CCGGGTAGGAAGGGAAGCTTATACAGCACCAGAGGTAAATGAGAAAGCAA
TCAGGAGTTATTATCCCCGTCTTCACCATTGCACCGGGAAGCAATCCTCA
CACTTCCTTCATTAGTTCAGAAGTGGGAGCTGCAGTTGTAACTCAATTGG
TATGGTGTTTGTCTGCCACTCATGGGCCAGGTTTCTATTCCCATGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_f14.b1 MSMg01no271_f14.b1 CHROMAT_FILE:
MSMg01no271_f14.b1 PHD_FILE: MSMg01no271_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:12 2005
         (269 letters)



>mm_chr1_129716538_129717201
          Length = 664

 Score =  420 bits (217), Expect = e-122
 Identities = 258/283 (91%), Gaps = 24/283 (8%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctacctgacctgacccttctcttccctactacctgcacttagaacatgtgcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gaattctctacctgacctgacccttctcttccctactacctgcacttagaacatgtgcaa 338

                                                                       
Query: 65  ctgaaagtcacagaaaaacccaaacctgcttcagggggagtatgtttttttgctttatgt 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 337 ctgaaagtcacagaaaaacccaaacctgcttcagggggagtat-ttttttt-ctttatgt 280

                                                                       
Query: 125 atttgaagggtgtggagatgatttgctgttgggacatgaggttttagaga-cataaccat 183
           ||||||||||||||||||||||||||||||||||||||||||||||| || | |  ||||
Sbjct: 279 atttgaagggtgtggagatgatttgctgttgggacatgaggttttag-gagc-t--ccat 224

                                                                       
Query: 184 ttcttcaggagctactgct-----------------gtctcccaggtctgccctggtccc 226
           |||||||||||||||||||                 ||||||||||||||||||||||||
Sbjct: 223 ttcttcaggagctactgctcctgctgaaatgctaatgtctcccaggtctgccctggtccc 164

                                                      
Query: 227 tactcttgggcggtgaccctctgttctaacctctcatcgctcc 269
           |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 163 tactcttgggcggtgaccctctgttctaacctctcatcactcc 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 664
Length adjustment: 9
Effective length of query: 260
Effective length of database: 655
Effective search space:   170300
Effective search space used:   170300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)