XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TGCACTTGGGAGGTAAGGCAGAGGTAGGAGAATCAGAGTTCAAAGCCTAC
CTTGGCTACACAGAAAGTTGGAAACCAGTCTGGGACTAGGTAATGAGAAA
GAGAAAGAGGAAGGGGTAAGGGGGAGGGAGGGATGGAGGANNNNNNNNNN
NNNNNNNNCNNNNNNNNNNNNNNNNANNTTNNNNNNNNTNNNNNNCTTTT
TTNTCTTTTNTTTCTTTCTTTTTTCCTTTTTTCCCTCTTCTCTTCCCTCC
CCCCTTCTTTTTTTTTTTTTCCCNCCCCCNCCANCCCCCCCCCCNNNANN
TTTTTTTGTGGGATTCCCAAGAACGAAAGCCCTTTTTTTTTTTTTTTTTT
TTTTTTGTTTTNGTCCCCTTTAAAAAAAAAAAAAAAAAAATTGGTTGGGG
GGGGGGTGTTTTTCTTCTTTTTCATTTATTTTTCGTTTCTTTTTTCCTTT
TTTATTTTTCTCTCTTGATCTTTTTTTTCTTTGCTTTTCTTTCCTTTTTT
TTTATTTTTCTTCCTCTATCTTTTTCTCTTTTTTTTACTTTTTTTATATG
TTTCTTCCTCTAATTTTATTTGTTTCTCTTTTCTTTTTCTTTTTTTCATC
CTTTTTTTTTGTCCCTATTTTTTTATTCTTTCTTTTTTTTTTTTTTCTTC
TCTTTCTTTTATATTTTTTTTTTTACGTATTCCTTCTATCTTTTTCTTTT
CGTCTTATTCTTATATTTATGACTTCGTATTATTTATATTTTTTCTTTTC

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGATCATTATCCAATGAACCACCACCCAAGG
GGCATCAAGCCTCACCGCCACCTTTGCATTGTGGGTAACTGACACAGTTG
TAACGTAGCTATTGGGAGATCTTTAAACCCGGTGAAACCAAAGCTGGTAA
GATGGCTCAGCTGGGGATGTGCTTGTCACACAAGTATATGGACCCTCCTA
AAAAAGCCAAATGTGGTAGCCGGTGTCTATAATCCCAAATTGGGGAAGTG
GAGCTAGGCAAATCCCTGATGCTCACTGGCCAGTCAGTTTAGCTTAATAG
GTGAGCTCTGAGAGGGTTTGGAGAAAGAAAAGGAAAGGAGAAACTAATGT
AATTAAATTATAATCTCAAAAGATAAATAAAAGTTTTTAAAATTAGAGAG
AGAGAGAGAGACCTTGTCAAAATACAAGGTGGATGTCACCTGAGGAGTAC
CACATGAGGTTGACCTCTGCCCTCAGAATGCACACACACCTGCATATGTA
CATGCACCTGCACCAACATAAACACACACACACACACACACACATACACA
CACACAAATTGAAAAAAGTGAAATCAAAGACACTTCTTATCATCAACCTT
GACCTGGGGAAACCAGTAGGCTACCTAGTGAATGTTCACAGAGATTCCAA
TTCTACAGAAAAGCCACAATAATTAGCTTGTGACTAAAGTATGT

Query= MSMg01no271_g18.g1 MSMg01no271_g18.g1 CHROMAT_FILE:
MSMg01no271_g18.g1 PHD_FILE: MSMg01no271_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:17 2005
         (588 letters)



>mm_chr1_129444619_129445606
          Length = 988

 Score =  946 bits (489), Expect = 0.0
 Identities = 573/621 (92%), Gaps = 34/621 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatcattatccaatgaaccaccacccaaggggcatcaagcctcaccgccacctttgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 atgatcattatccaatgaaccaccacccaaggggcatcaagcctcaccgtcacctttgca 260

                                                                       
Query: 61  ttgtgggtaactgacacagttgtaacgtagctattgggagatctttaaacccggtgaaac 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtgggtaactgacacagttgtaatgtagctattgggagatctttaaacccggtgaaac 320

                                                                       
Query: 121 caaagctggtaagatggctcagctggggatgtgcttgtcacacaagtatatggaccctcc 180
           ||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 321 caaagctggtaagatggttcagctggggatatgcttgtcacaccagtatatggaccctcc 380

                                                                       
Query: 181 taaaaaagccaaatgtggtagccggtgtctataatcccaaattggggaagtggagctagg 240
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaaagccaaatgtggtagcccgtatctataatcccaaattggggaagtggagctagg 440

                                                                       
Query: 241 caaatccctgatgctcac-tggccagtcagtttagcttaataggtgagctctgagagggt 299
           ||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaatccctgaggctcacatg-ccagtcagtttagcttaataggtgagctctgagagggt 499

                                                                       
Query: 300 ttggagaaagaaaaggaaaggagaaactaatgtaattaaattataatctcaaaagataaa 359
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttggagaaaggaaagggaaggagaaactaatgtaattaaattataatctcaaaagataaa 559

                                                                       
Query: 360 taaaagtttttaaaattagagagagagagagaga----------------------cctt 397
           ||||||||||||||||||||||||||||||||||                      ||||
Sbjct: 560 taaaagtttttaaaattagagagagagagagagagagagagagagagagagagagacctt 619

                                                                       
Query: 398 gtcaaaatacaaggtggatgtcacctgaggagtaccacatgaggttgacctctgccctca 457
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 620 gtcaaaatacaaggtggatgtcacctgaggagtaacacatgaggttgacctctgccctca 679

                                                                       
Query: 458 gaatgcacacacacctgcatatgtacatgcacctgcaccaacataaacacacacacacac 517
           |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 680 gaattcacacacacctgcatatgtacatgcacctgcacccacataaacacacacacacac 739

                                                                       
Query: 518 acacacacatacacacacaca----------aattgaaaaaagtgaaatcaaagacactt 567
           ||||||||| |||||||||||          |||||||||||||||||||||||||||||
Sbjct: 740 acacacacacacacacacacacacacacacaaattgaaaaaagtgaaatcaaagacactt 799

                                
Query: 568 cttatcatcaaccttgacctg 588
           |||||||||||||||||||||
Sbjct: 800 cttatcatcaaccttgacctg 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)