AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATATTCATATGCAGATTGTTTGACTTGATCTCCAGGGTTTCTGGATC
ACCAGGTCCAAAGTGGGGTCTGCTGATTCTCATTTCTAATAAGCCATATG
ATTATAAGGCCTCTGTAAATTGTATTTTAAGAATCAGAAAGCTAAACTAA
TCATGAAAATGGCCAATATGAGGAATAAAAATGAGACTATCTCTTAAGTC
TTATAAATATTAAAAAGAAGGAATGTTCACCATTATGTTTTGAATCTGTT
ATGTCCTCCACAATCTAATGTGTATATGTGTGACTATCTTATCCTCAGAT
AGNGGCGTNATTTGGATACATNGACAANNTCTGGAANCTAGAGCCTGGAT
GTCTGAATAGCCCCCCAAGGAAAACAAAAAAGTTATAACCAAGATTTGCT
TTGCTTTCCTTCTGCTTCTTGACTTTCTGAGATGTTCCTCTTCCATGGAC
TCTCACATCTACCCAAAGCCCCTCACTGGTGATCCCTTCCTCCCATGATG
CACTGGAACAGTTCAGTCCTTGTCTGTCTCTGGTATTAGGTCACAGTGGT
GAGAAAAGTAGCTAGCACAATAGTGGAGGAAGGAAAATTCATTATAGGAG
ACTAACATCCTCTGGCACCAAACCTAGAGAAACACATTATAAGAAAATAG
CAAGGAACAGAGATGGCTCAGTATTCAAGAGCATGTACTTGTG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAGTAGTTACTATGTATTTCCAGTAATGCCA
GGGATGCTCTGTGTCCCATCAGCTTGCAATCTCAGCCTGCCTCTCTTGCC
TCCTCTTTACCCACTTCCCCCAGTGAATGCTTCCATTAATCAGTCTTCAT
TTGTAGAAATGCTGAGCCATAGGCACATCAGGAGACTCATAGTTTACAAG
TCACTCTACTTACCCAGAGTCTTTTAAATATGATTTCACTGTTTCTTATG
CTTTCAAAATTTGTAAAGATTTTAAAGCCCAAGGGGAAGAAAATAATGAG
GTAATGTTNATTCTTTACCCCCCCCCCCTCACTAGGGTGCCATATTGATC
TTGGCATATGACAAATGTTTTATCAAAACTTCTGAAGTCATGTAGAATTT
CTGCAGAGTCAATGCCTGTTGGCCTCCTCAAGTCACTATGGCAGCCCCAA
CACCCAGCACATAAAATGTAAATTAATTTCTTTGTTTACTTATAAAACCT
GTATACAGAACTGGTATTTTGAATAGGACCTCAGATTCACTCTACTTACA
GTTTCAAATCTTTAGGTCTATAAAAATAAGTGGATGGGGTGTTTGGTTAT
TTCCACACAAGTGTATCTCTTAAAAGATAAAATTTTGATATTAATACATA
TAACCAAAATGGTAATCATTCGCAATTGAAAGGTTATTATAC

Query= MSMg01no271_h07.b1 MSMg01no271_h07.b1 CHROMAT_FILE:
MSMg01no271_h07.b1 PHD_FILE: MSMg01no271_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:20 2005
         (309 letters)



>mm_chr1_84336124_84336832
          Length = 709

 Score =  576 bits (298), Expect = e-169
 Identities = 304/306 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatattcatatgcagattgtttgacttgatctccagggtttctggatcaccagg 63
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 204 ggaattcatattcatatgcagattgtttgacttgatctccagggtttctggatcgccagg 263

                                                                       
Query: 64  tccaaagtggggtctgctgattctcatttctaataagccatatgattataaggcctctgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccaaagtggggtctgctgattctcatttctaataagccatatgattataaggcctctgt 323

                                                                       
Query: 124 aaattgtattttaagaatcagaaagctaaactaatcatgaaaatggccaatatgaggaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaattgtattttaagaatcagaaagctaaactaatcatgaaaatggccaatatgaggaat 383

                                                                       
Query: 184 aaaaatgagactatctcttaagtcttataaatattaaaaagaaggaatgttcaccattat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaaatgagactatctcttaagtcttataaatattaaaaagaaggaatgttcaccattat 443

                                                                       
Query: 244 gttttgaatctgttatgtcctccacaatctaatgtgtatatgtgtgactatcttatcctc 303
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 gttttgaatctgttatgtcctccacaatctaatgtggatatgtgtgactatcttatcctc 503

                 
Query: 304 agatag 309
           ||||||
Sbjct: 504 agatag 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no271_h07.g1 MSMg01no271_h07.g1 CHROMAT_FILE:
MSMg01no271_h07.g1 PHD_FILE: MSMg01no271_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:20 2005
         (286 letters)



>mm_chr1_84476212_84476897
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtagttactatgtatttccagtaatgccagggatgctctgtgtcccatcagcttgcaa 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 486 tagtagttactatgtatttccagtattgccagggatgctctgtgtcccatcagcttgcaa 427

                                                                       
Query: 61  tctcagcctgcctctcttgcctcctctttacccacttcccccagtgaatgcttccattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tctcagcctgcctctcttgcctcctctttacccacttcccccagtgaatgcttccattaa 367

                                                                       
Query: 121 tcagtcttcatttgtagaaatgctgagccataggcacatcaggagactcatagtttacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tcagtcttcatttgtagaaatgctgagccataggcacatcaggagactcatagtttacaa 307

                                                                       
Query: 181 gtcactctacttacccagagtcttttaaatatgatttcactgtttcttatgctttcaaaa 240
           ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 306 gtcactctacttacccagagtcttttaaatacgatttcaccgtttcttatgctttcaaaa 247

                                                         
Query: 241 tttgtaaagattttaaagcccaaggggaagaaaataatgaggtaat 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttgtaaagattttaaagcccaaggggaagaaaataatgaggtaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)