BAC Information

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BAC

Clone NameMSMg01-271I23
Chromosome1 (Build37)
Map Location 120,554,775 - 120,555,063
singlet/doubletsinglet
Overlap geneTcfcp2l1
Upstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1
Downstream geneLOC100041753, Gli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271I23.T7 (MSMg01no271_i23.b1)MSMg01-271I23.TJ (MSMg01no271_i23.g1)
ACCAG411079AG411080
length767749
length of high quality
(start - end)		680 (66 - 745)293 (69 - 361)
definitionCHROMAT_FILE: MSMg01no271_i23.b1 PHD_FILE: MSMg01no271_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:27 2005CHROMAT_FILE: MSMg01no271_i23.g1 PHD_FILE: MSMg01no271_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
AACTGAGTACCACCAAATGGCTGAGAAGCACCTAAGAAAATGTTCAACGT
CTATAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTGTACCTC
ACACCAGTCAGAATGGCTAAAATAAAAAATGCAGGTGACAGCAGATGCTG
GCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCA
AGGTGGTACAACCACTCTGGAAATTAGTTTGGCGGTTCCTCAGAAAATTG
GACATAGTACTACCGGAAGATCACCACTCCTGGGCATATACCCAGAAGAT
GTTCCAACTGGTAATAAGGACACATGCTCCACATAGCAGCCTTATTTATA
ATAGCCAGAAGCTGGAACAAACCCAGATATCCCTCAACAGAGGAATGGAT
ACAGAAAATGTGGTACATTTTTACAATGGAGTACTACACAGCTATTAAAA
ACAATGAATTTATGAAATTCTTAGACAAATGGGTGGATCTGGAGGATATC
ATCCTGAGTGAGGTAACCCAATCACAAAAGAACACACATGAAATGCACTC
ACTGATAAGTGGATATTAGCCCAGAAGCTCAGAATACCCAAGATACAATT
TGCAAAACACATGAAACTCAAGAAGAAGGAAGACCAAAGCATGCCTGGCT
TTTTGTGTGAGTTCTGGGCTTCAAACTCAGGTCTTCATGCTTGAGATGGG
AGCACTGTACTGAGGGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATACCTGCTATTAGTGTTCCTGTGTGGCTTA
CTACAAGCTTATCTTTACCTAGGGCTGGATCACCCCAAGAGAGGTTTCCC
TAAAAGCCCCTGATCTGGGAACCAAAAGGCATCCCTTGAGGAAGACGCAC
ACTGGGATGCAAGTCCTGTGCGGCCGGCCGGCCACTAGACCTGAACTAAG
TGTTCCTATCTACACATCAAGGGCTCTGGGGCTTCTACCTGTGCTTGCCA
AGCAGGATAGGATAGGATAGGAGCCATGAGAGGCACAATGAAGGTGACAC
AGGAGTGAGTTTTTTTAGGCACCCCACCCTCAGGTCTCTCCTCCTAACAA
ACCCTGAGCCTCTAGTTTGTGAAGAAGAGAGATGATGGTGGCTCTGAGGC
TGGCACTCGCTGGCACTATCTGTGACTAGAAATAGATTCTGCAGCCTGTT
GCATCATCATTTAGCTACAGCAGAGACGGATGCCTTTGGGGCTGCGATGT
TGAGGGCTGGGTGTGCTGGGCCTGAGCAGAGTTGAACAAGGCACAGTGTG
GGTCAGAATCCACTCTCCTACCTTTCTGTGGTCTCCATCAGTCGCCCCAG
CACTGATATATCCTGTCTTGGTTCTCCATGGCTCCTTCCAGAAGCAAGTG
GCCATTGGTGGCAATCTTCCTAAATACTTCCTGCTGAGCTCAAAGATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_i23.g1 MSMg01no271_i23.g1 CHROMAT_FILE:
MSMg01no271_i23.g1 PHD_FILE: MSMg01no271_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:27 2005
         (293 letters)



>mm_chr1_120554575_120555264
          Length = 690

 Score =  518 bits (268), Expect = e-151
 Identities = 285/292 (97%), Gaps = 3/292 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   catacctgctattagtgttcctgtgtggcttactacaagcttatctttacctagggctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacctgctattagtgttcctgtgtggcttactacaagcttatctttacctagggctgg 260

                                                                       
Query: 61  atcaccccaagagaggtttccctaaaagcccctgatctgggaaccaaaaggcatcccttg 120
            ||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gtcaccccaag---ggtttccctaaaagcccttgatctgggaaccaaaaggcatcccttg 317

                                                                       
Query: 121 aggaagacgcacactgggatgcaagtcctgtgcggccggccggccactagacctgaacta 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aggaagacgcacagtgggatgcaagtcctgtgcggccggccggccactagacctgaacta 377

                                                                       
Query: 181 agtgttcctatctacacatcaagggctctggggcttctacctgtgcttgccaagcaggat 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 378 agtgttcctatctacacatcaagggctctggcgcttctacctgtgcttgccaagcaggat 437

                                                               
Query: 241 aggataggataggagccatgagaggcacaatgaaggtgacacaggagtgagt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aggataggataggagccatgagaggcacaatgaaggtgacacaggagtgagt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 690
Length adjustment: 9
Effective length of query: 284
Effective length of database: 681
Effective search space:   193404
Effective search space used:   193404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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