BAC Information

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BAC

Clone NameMSMg01-271L23
Chromosome1 (Build37)
Map Location 96,794,048 - 96,794,330
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
Downstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271L23.T7 (MSMg01no271_l23.b1)MSMg01-271L23.TJ (MSMg01no271_l23.g1)
ACCAG411214AG411215
length759754
length of high quality
(start - end)
505 (67 - 571)293 (70 - 362)
definitionCHROMAT_FILE: MSMg01no271_l23.b1 PHD_FILE: MSMg01no271_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:41 2005CHROMAT_FILE: MSMg01no271_l23.g1 PHD_FILE: MSMg01no271_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TCTGACAATTGCAGATTCTCCACAGATACTTAAAAGAACAGCTAAGCTAC
ACTCATACAAGAATTTATCACCGCCCAGGAAATAGGGGGGTTGTGGTATT
GCATTATTCATGAGAAGGTCTGCTAGAGCAGAACCTCCTGGTGCTAGCTT
TCACAAGGCTCAAGGGAGTAGCTCAAATTGTGACTAGGGTGTGAAAACCT
TGCCTATCATTAAGCTGACCCTATGCAGGATTGCTTTATCTTTACTGTAA
ACATTTACCTGGTTCCTACAAGTCCTTTTGAAGTCATTCCTTTGTTTTGT
GTCAGGTAACTTCTTTGTACTTTGCCTACTGTGACATCCTACCCCCTGTA
TTTTCTGTATTATACCACTCTGGTGTTCACTTTGTGACAATACATTCAGA
TTCTACACAATCTCGAGTGTTGAGCTGTCTGTCATTCACAGACTCCTTGC
CCATCTGCAACCAGAGACCCGTTCTACATAGACAAGGGACCAAGAGGGTC
TGTGGAAGAGGCTCAATGCCCCAGTGTAGGGGAATGTCAAGGTGTGGAGG
CAGGAGTGGATTGGTGTATGGGGGATCATCCTTCTTGAGCAAGCGCCCGG
CGGTGCCTCCCCCCTTATCTTCTTTTTTTTTATCCTCCTTATTTTTAACC
CTTTTTTCTTCCCATTGACCCTTTATTTTCTCTCCCTTTTCGGCCTTCAT
CTTTTATCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAGGGAGAAGAAAAATTTCAACATGGGAATG
TATTTCTGAAGTTATTTTCTCTTTAAAATACACACACACACACACACACA
CACACACACACACACACACACACACACACGCACACCACACCCACATTGTA
TACAAATGGGTACACTGAGGAATAGGTATGTCTCCATCTGGAAGAGTTTA
ACCGTACAGTCTTTTTTAATTATTATTAGTTTTTAAAGTCACAAAGCATT
GCTTGCTTCTATGCTGCTGTCTTTTTCTCTCTACACAGATTCTCAGACCA
GCTCTGTATATTNGTTCACCCCNACCTTGNCCAATTGAATGAAGCTGTTG
TTTTCTCTTTGATCTGCCTGTGGAAAAAAACAAAAGTTTCTCCAATTGGG
AGAAAATTGGCAAAAAAGCCAACAACAACAATAAAAAGTTTCTTCTGGAA
AGCTGTGTTAACAACACAGAAAGGGATTTATTCTGCCTTTACTGTCAATA
GGATAAGAGCTTGGTCTATTTTTTGTTTGTTTTTGTATAAATTCTCTTCA
GTAGCATGTCAATGGATAATTGTTTCAATTAGTTTCTACAACAGAAATCT
CTTAGTGGACATATTACAATGCTAAAGATAAATTTATGAAACAATCCATT
ATCACCAGACTATGATTTCTATAACTCAGTAATATTGACATAATTATAGG
AAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_l23.g1 MSMg01no271_l23.g1 CHROMAT_FILE:
MSMg01no271_l23.g1 PHD_FILE: MSMg01no271_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:41 2005
         (293 letters)



>mm_chr1_96793842_96794534
          Length = 693

 Score =  478 bits (247), Expect = e-139
 Identities = 276/289 (95%), Gaps = 6/289 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagggagaagaaaaatttcaacatgggaatgtatttctgaagttattttctctttaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 207 tagggagaagaaaaatttcaacatgggaatgtatttctgaagttattttctttttaaaat 266

                                                                       
Query: 61  acacacacacacacacacacacacacacacacacacacacacacacacacgcacaccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||      ||||||||||
Sbjct: 267 acacacacacacacacacacacacacacacacacacacacacac------gcacaccaca 320

                                                                       
Query: 121 cccacattgtatacaaatgggtacactgaggaataggtatgtctccatctggaagagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccacattgtatacaaatgggtacactgaggaataggtatgtctccatctggaagagttt 380

                                                                       
Query: 181 aaccgtacagtcttttttaattattattagtttttaaagtcacaaagcattgcttgcttc 240
           ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactgtacagtctttttaaattattattagtttttaaagtcacaaagcattgcttgcttc 440

                                                            
Query: 241 tatgctgctgtctttttctctctacacagattctcagaccagctctgta 289
           |||||||||| |||   ||||||||||||||||||||||||||||||||
Sbjct: 441 tatgctgctgccttcagctctctacacagattctcagaccagctctgta 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)