Query= MSMg01no271_o19.b1 MSMg01no271_o19.b1 CHROMAT_FILE:
MSMg01no271_o19.b1 PHD_FILE: MSMg01no271_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:55 2005
(651 letters)
>mm_chr1_16616950_16617998
Length = 1049
Score = 1083 bits (560), Expect = 0.0
Identities = 624/648 (96%), Gaps = 10/648 (1%)
Strand = Plus / Plus
Query: 5 gaattccaagttcaatttctagtgcttatgcattgctttcagagtatcatagaatacaaa 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagttcaatctctagtgcttatgcattgctttcagagtatcatagaatacaaa 264
Query: 65 agcagtagttgaaaccagccagagactacccggacttcattctttccctgagcctgagac 124
|| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 agtagtagttgaaacaagccagagactgcccggacttcattctttccctgagcctgagac 324
Query: 125 agcccaggtctacagcccttcaggtctacagcccttcaggtctacagccctttgtgcata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcccaggtctacagcccttcaggtctacagcccttcaggtctacagccctttgtgcata 384
Query: 185 atccttgcttattcctctcctagatttcttcagctcttctttaaataattgtttgaaaag 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 atccttgcttattcctctcctagatttcttcagatcttctttaaataattgtttgaaaag 444
Query: 245 gatgtggctcctttttttttttctatcaacctctttaaaaaccaaataagggactttcca 304
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatgtggctccttttttttt--ctatcaacctctttaaaaaccaaataagggactttcca 502
Query: 305 ttagatcactgccactgtgtacacgagtctcatgccatccatcatgctcttaaataaagc 364
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 503 ttagatcactgccactgtggacacgagtctcatgccgtccatcatgctcttaaataaagc 562
Query: 365 atctgtattgtgtgtaaaatgaggtgaatgtcctcatacccacaagtaagtgtactcatc 424
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 563 atctgtattgtgtgtaaaatgaggtgaatgtcctcatacccacaaataagtgcactcatc 622
Query: 425 atcagcattaaggaaactgagctttgcaaccaacaaagac-tgttgtagaaaacaacagc 483
|||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct: 623 atcagcattaaggaaactgagctttgcagccaacaaagacct-ttgtagaaaacaacagc 681
Query: 484 cagctgggcggtggtggcacacgcctttaatcccagcacttgggaggcagaggcaggtgg 543
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cagctgagcggtggtggcacacgcctttaatcccagcacttgggaggcagaggcaggtgg 741
Query: 544 gtttctgagttcaaggccagcctggtctacagagtgtgttccaggacagccagagaaacc 603
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 742 atttctgagttcaaggccagcctggtctacagagtgagttccaggacagccagagaaacc 801
Query: 604 ctgtctcgaaaaaccnnnnaaaaaaaaaaagaanaaaaaaaaagaaag 651
||||||||||||||| ||||||||||| || ||||||||| ||||
Sbjct: 802 ctgtctcgaaaaacc----aaaaaaaaaaaaaa-aaaaaaaaa-aaag 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1049
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1039
Effective search space: 665999
Effective search space used: 665999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_o19.g1 MSMg01no271_o19.g1 CHROMAT_FILE:
MSMg01no271_o19.g1 PHD_FILE: MSMg01no271_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:55 2005
(471 letters)
>mm_chr1_16678484_16679350
Length = 867
Score = 861 bits (445), Expect = 0.0
Identities = 463/469 (98%), Gaps = 6/469 (1%)
Strand = Plus / Minus
Query: 1 caggtagttacagctatatagaaagaccctgtctcaaaacagatttcaatagagtaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 caggtagttacagctatatagaaagaccctgtctcaaaacagatttcaatagagtaataa 802
Query: 61 ttactgcataaatct-aaaatcactattcgaaatcaaataaaatcattatttgtcaagtg 119
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttactgcataaatctaaaaatcactattcgaaatcaaataaaatcattatttgtcaagtg 742
Query: 120 actcatacagtgaattctaaaataactttcattttgcaaatt-aaaaaaaagtgaggctg 178
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 actcatacagtgaattctaaaataactttcattttgcaaattaaaaaaaaagtgaggctg 682
Query: 179 agaatgtctaagtattttgctcaaggtcacacagttggggaggaagaaggatgcttccaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaatgtctaagtattttgctcaaggtcacacagttggggaggaagaaggatgcttccaa 622
Query: 239 gagcactctaggaccacaggctggagctacaaccccaccaggaagcactgtgggttagcc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagcactctaggaccacaggctggagctacaaccccaccaggaagcactgtgggttagcc 562
Query: 299 tcctcaagaggaaccagtttgtgtcgggngctggtactccagaagcaaactagaaactaa 358
|||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||
Sbjct: 561 tcctcaagaggaaccagtttgtgtcggg-gctggtact-cagaagcaaactag-aactaa 505
Query: 359 gaagaacctngaaaccgagctccgagtggagagagcttaaccacaagacagcaacagagg 418
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaagaacct-gaaaccgagctccgagtggagagagcttaaccacaagacagcaacagagg 446
Query: 419 taaaaagcaattcagaggtcctggggaaacgcggggggggggggggggg 467
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaaaagcaattcagaggtcctggggaaacgcggggggggggggggggg 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 867
Length adjustment: 10
Effective length of query: 461
Effective length of database: 857
Effective search space: 395077
Effective search space used: 395077
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
