ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAATGTATGCCCAAGCAGTGGTTCCTGAAAAACCTCCTGGTGGAGGAG
AAAGATCAAAGATTAAAACTCTAATACTCCAAGGAGCTGGTGTGACAGCT
GACAGCAAAAAAAAGGTGTCTGGCACAGTCACCCAGCAGTGTGCTCTAGC
CCAGAGCTGGCCAGCAGCCAAAGTTTCATATCCTGTGGGTACTGGAGGAC
ACCCTCTGCCTTGCAGCCTGTTAGTAGAGGTTAAGGTTGTGACACTTACC
CCAGACTCTCAAAGTTCTCAGTATCCCAGAGCCTAGGGTAACTTCACCCT
TAACTTTCATTGTATGCGCCCCCCCCCAATTAACAGATTCAAACACCTTT
TAGTAAAGGCCTAATGAGAAAAATGAAAAGGGAGACCCCTGGCTGCTTGT
TTGCTGTCTTGGTATGTGAGGCTTTTTCCCCCTTATAATTTATTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTNNTTNNNTTTTNTNTTTTTTTTTT
TTTNNTTGTTTGTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTGTTGTTTTTTTGGGGGTTTGGTGTGTTGGTTTTTTTTGT
TTTTTTTTTTTGTTTTTTTGGGTTGTGTTTGGGTTGTGTTTTTTTGTTTT
TTTGGTGTTTGTTTTTGTTTGTTTTTTGTTTGTNTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTATGTGGGTACTGGAGAAAACACCGTTGGC
CTAGTTAATGGTTATCCCTCTCTTGTCTGATGTTGGGTGCAAAATCACTT
TGATAGACAGAAGACTTTGAAAGACATGAGTAAGCTGGTAGCTAGAGTGA
AATTTCTAAGGAGATGCTGCTAACATGTGTTCTCATATCTGACTGCAGCT
GAAATGTCTTTCTCTAAATGTGTGCAGAACAGTAGCATGCGGGCTTCCAG
GTTCCTTTAGCTTATTCTTATACTGCCATCCTCTTTCCTTTCCTTACTGG
TTTTTGGTTGAGTCNTNTCAATGGCCAGCTCCCAAGCTCCTGGNAGTGTT
CACTGTACNTCACCTTAGAAAAGAAATTAAGTAGTCGAGTAACCTCCCCA
ATTCACACCCTATTGCTATATGTAAGACTTCCCCAATTTTTATTCATTGG
TTATGAATATTCTTTACAAAGCTGCTTGTAACTTAACTATAATACCGGTG
AAGAAAAACCAATACTCATTTATCCAACCTAACACTTGTAAGAATTGCCT
ATTTAAATTGTGTGCAAATGCATTAACAAATAATGAATTAATTTTTTAAG
GCACAGAAAATTAAATACTACACACACAAAAATTGATTTTGGTGCATTCA
GGACTATATACATTTCTCCCTGCCCGTCTTCTTAATTCGTTTGGC

Query= MSMg01no271_p12.b1 MSMg01no271_p12.b1 CHROMAT_FILE:
MSMg01no271_p12.b1 PHD_FILE: MSMg01no271_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:58 2005
         (289 letters)



>mm_chr1_178005421_178006109
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagtggttcctgaaaaacctcctggtggaggagaaagatcaaagattaaaactctaat 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 201 agcagtggttcctgaaaaacctcctggtggagaagaaagatcaaagattaaaagtctaat 260

                                                                       
Query: 61  actccaaggagctggtgtgacagctgacagcaaaaaaaaggtgtctggcacagtcaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actccaaggagctggtgtgacagctgacagcaaaaaaaaggtgtctggcacagtcaccca 320

                                                                       
Query: 121 gcagtgtgctctagcccagagctggccagcagccaaagtttcatatcctgtgggtactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagtgtgctctagcccagagctggccagcagccaaagtttcatatcctgtgggtactgg 380

                                                                       
Query: 181 aggacaccctctgccttgcagcctgttagtagaggttaaggttgtgacacttaccccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggacaccctctgccttgcagcctgttagtagaggttaaggttgtgacacttaccccaga 440

                                                            
Query: 241 ctctcaaagttctcagtatcccagagcctagggtaacttcacccttaac 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctcaaagttctcagtatcccagagcctagggtaacttcacccttaac 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no271_p12.g1 MSMg01no271_p12.g1 CHROMAT_FILE:
MSMg01no271_p12.g1 PHD_FILE: MSMg01no271_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:59 2005
         (283 letters)



>mm_chr1_178139346_178140028
          Length = 683

 Score =  435 bits (225), Expect = e-126
 Identities = 267/281 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatgtgggtactggagaaaacaccgttggcctagttaatggttatccctctcttgtct 60
           ||||||||| |||||||||||||| ||||| |||||||||||| |||  |||||||||||
Sbjct: 481 tctatgtggatactggagaaaacaacgttgacctagttaatggctataactctcttgtct 422

                                                                       
Query: 61  gatgttgggtgcaaaatcactttgatagacagaagactttgaaagacatgagtaagctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatgttgggtgcaaaatcactttgatagacagaagactttgaaagacatgagtaagctgg 362

                                                                       
Query: 121 tagctagagtgaaatttctaaggagatgctgctaacatgtgttctcatatctgactgcag 180
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 361 tagctagagtgaaatttctaaggagatgctgctaacatgtgtcctcatctctgactgcag 302

                                                                       
Query: 181 ctgaaatgtctttctctaaatgtgtgcagaacagtagcatgcgggcttccaggttccttt 240
           |||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct: 301 ctgaaatgtctttctctaaatgtgcgcagagcagtagcatgcgggcgtccaggttccttt 242

                                                    
Query: 241 agcttattcttatactgccatcctctttcctttccttactg 281
           ||||||  |||| ||||||||||||||||||||||||||||
Sbjct: 241 agcttaagcttacactgccatcctctttcctttccttactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)