XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCGCGGAATTC
GGTAGGAATTTCACAATATCAAAAATACCTTTTAAACTGAGAAAATTGAA
TGTGTGTTTAAGGTGTGAATGACCCATGCCCCTCTCCCAAGACATTCTGT
TCAATACATGTGGCTAACACATACAAACACATTCACGTTTCTCAATATTA
TTCGAGTTACAGTTTAAAAAATGAAACTAAAAATTGTAAGTTTGGTTCAC
AGTAGGAAATCTTTTTTTCATATTTAGTTTTATATCTGTGCTGGTTAATA
GTATCTGGCCCTTTTTTTTTTTGTAATGATTTATTCTTTCATGTCAAAGG
AAGTAGTATAGTTTGAAACATTTGCCTAGTTTAAAAAAAATTAAAAAAAA
AGTTTTCTGGTGTTTCCAGATAAATATATAGCAAAGAAGAAATCAGTTTT
TAATCACACACTTCTATAGGAAAATGTGATATGCACTAGGTTTGTTCTTC
TTTGTTGTCTTCTATGTAGTTTTATGTGGTATTTTATATATATATATATA
TAGTTGAATTCCAGTTATTATTCATTTTTCAATTGGAAAATTGAATGATA
TAGCTTATCTTCCTTTATAACTAAATAGGTAAAAATTGGAATTCTTATAT
TTTTGTAAATGATAAATCTCATTCACATGGTGTGAATTCTAGTCTATGTT
ATTTTAAAAAAAAACAACTTAAATCATTATAGCACAACTAGGTTTGATGG
TAATTTTA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTTAATGGG
GTTATTTAAATTTCTGGAGTTCGGTTTCTTGAGCTCTTTGTATATATTGG
ATATTAGTCCCCTATCAGATTTAGGATTGGTAAAAATTCTTTCCCAATCT
CTTGGTGGTCTTTTTGTCTTATTGACAGTATCTTTTGCCCTACAGAAGCT
TTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATATTACAGCACAGG
CCATTGATGTTTTGTTTAGGAATTTTTCCCCTGTGCCCATATCTTCGAAG
GTTTTCCCCTTTTTCTCTTCCACCACTTTCAGTGTGGATGGTTTTATTTA
GAGTTGTCTGATCCATTTAGACTTGAGCTTTGTACAAGGAGATAAGGACG
GAACAATTCACATTCTTCTACATGATAACCACCAGTTATGACAGCACAAT
TTGTTGAAAATGCTGTCTTTTTTCCTATGAATGGTTTTAGCTCCCTTGTC
ATAGATCAGGTGACCATAGGTGTGTGGTTTCACTTCTGGGTCTTCAAATC
TATTCCATTGATCTACCTGTCTGTTGCTGTACCATTACCATACAGTTTTT
TATCACAATTGCTCTGTAGTACAGCTTGATATCAGGCATGGAGATTGTCC
CAGAGGTTCTTTTATAGTTGAGAATAGTTTTTGCTATCGTAGGTTTTTGT
TA

Query= MSMg01no272_b10.b1 MSMg01no272_b10.b1 CHROMAT_FILE:
MSMg01no272_b10.b1 PHD_FILE: MSMg01no272_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:08 2005
         (683 letters)



>mm_chr1_48231162_48232243
          Length = 1082

 Score = 1108 bits (573), Expect = 0.0
 Identities = 666/727 (91%), Gaps = 50/727 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaaaataccttttaaactgagaaaattgaatgtgtgtttaaggtgtgaatgacccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tcaaaaataccttttaaactgagaaaattgaatgtgtgtttaaggtgtgaatgacccatg 221

                                                                       
Query: 61  cccctctcccaagacattctgttcaatacatgtggctaacacatacaaacacattcacgt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 222 accctctcccaagacattctgttcaatacatgtggctaacacatacaaacacattcacat 281

                                                                       
Query: 121 ttctcaatattattcgagttacagtttaaaaaatgaaactaaaaattgtaagtttggttc 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttctcaatattatttgagttacagtttaaaaaatgaaactaaaaattgtaagtttggttc 341

                                                                       
Query: 181 acagtaggaaatctttttttcatatttagttttatatctgtgctggttaatagtatctgg 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atagtaggaaatctttttttcatatttagttttatatctgtgctggttaatagtatctgg 401

                                                                       
Query: 241 ccctttttttttttgtaatgatttattctttcatgtcaaaggaagtagtatagtttgaaa 300
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cc---tttttttttgtaatgatttattctttcatgtcaaaggaagtagtatagtttgaaa 458

                                                                       
Query: 301 catttgcctagtttaaaaaaaattaaaaaaaaagttttctggtgtttccagataaatata 360
           |||||||||||||| ||||||||||||||||  |||| ||||||||||||||||||||||
Sbjct: 459 catttgcctagttttaaaaaaattaaaaaaa--gtttcctggtgtttccagataaatata 516

                                                                       
Query: 361 tagcaaagaagaaatcagtttttaatcacacacttctataggaaaatgtgatatgcacta 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 517 tagcaaagaagaaatcagtttttaatcacacacttctataggtaaatgtgatatgcacta 576

                                                                       
Query: 421 ggtttgttcttctttgttgtcttctatgtagttttatgtggtatt-t------------- 466
           ||||||||||||||||||||||||||||||||||||||| ||||| |             
Sbjct: 577 ggtttgttcttctttgttgtcttctatgtagttttatgttgtattatatatatatatata 636

                                                                       
Query: 467 ------------------------------tatatatatatatatatagttgaattccag 496
                                         ||||||||||||||||||||||||||||||
Sbjct: 637 tatatatatatatatatatatatatatatatatatatatatatatatagttgaattccag 696

                                                                       
Query: 497 ttattattcatttttcaattggaaaattgaatgatatagcttatcttcctttataactaa 556
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ttattattcatttttcaatgggaaaattgaatgatatagcttatcttcctttataactaa 756

                                                                       
Query: 557 ataggtaaaaattggaattcttatatttttgtaaatgataaatctcattcacatggtgtg 616
           |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 757 ataggtaagaattggaattcttatatttttgtatatgataaatctcattcacatggtgtg 816

                                                                       
Query: 617 aattctagtctatgttattttaaaaaaaaacaacttaaatcattatagcacaactaggtt 676
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 817 aattctagtctatgttattttaaaaaaaa-caacttaaatcattatagcacaactaggtt 875

                  
Query: 677 tgatggt 683
           |||||||
Sbjct: 876 tgatggt 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1082
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1072
Effective search space:   721456
Effective search space used:   721456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)