BAC Information

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BAC

Clone NameMSMg01-272C18
Chromosome1 (Build37)
Map Location 26,911,579 - 26,911,865
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik
Downstream geneLOC677427, LOC100040952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272C18.T7 (MSMg01no272_c18.b1)MSMg01-272C18.TJ (MSMg01no272_c18.g1)
ACCAG411530AG411531
length735747
length of high quality
(start - end)		315 (46 - 360)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no272_c18.b1 PHD_FILE: MSMg01no272_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:15 2005CHROMAT_FILE: MSMg01no272_c18.g1 PHD_FILE: MSMg01no272_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGCTATGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGGAGTCCACCTTCTTGAATTCTTTTTATATATTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCATTTCCCAATCTGTTAGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTACCTTGCAGAAGCTTTGCAAATTTAT
GAGGCCCCATTTATTGATTCTCCATCTTACAGCACAAGCCATTGCTGTTT
TATTCAGGAATTTTTTGCCCGTGCCCATATCTTCCACACTTTTCCCTACT
TTCTCCTCTATTTGTTTCAGCGCCTCTCCCCTTATGTGGAGTTCCTTAAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCA
TTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGCTGAAAATG
CTGTCTTTTTTTTTCCACTGGATGATTTTAGCTCCCTTGTCAAAGATCAA
GTGACCATAGGTGTGTGTGTTCAAAACTGGGTCTTCAATTCTGTTCCATT
GGTCTACTTATCTGTTGCTATACCAGTACCATGCAGTTTTTACCACAATT
GCTCTGTAGTACAGCTTTAGGTCAGGCATGTTGATTCTACCAGAGGTTCT
TTTATCCTTGAGATGAGTTTTTGCTATCCTAGGTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCTATTTACCTTGTTCAGTTAAG
AAAGTTGTGATAGAAGAAATTAGAACATTTATCTCTCTTTAAGGGAATTA
GGGATATAATTTAGGTAGGGAGAAGAGGGAATGTAAGTTTAAGAAAGAGA
TAATGGATAGACTTCCTGACAAGACTCTTATTAATGCTATTACATGCTGA
GTAAAAGATAGTAAAGGTAGTGTCTTAGTCATTGTTCTATTGAGATAAAG
AAATGGCATGAGTGGCATGAGTTTTATTAAAAGACCTAAACCTCAAGAGA
CTGGAGGCCTCAGAGATTTATCCTNTNGCCAGGGCGGAGGGTGGGGGGAN
AGNNNNNNNGNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAGGGGGGGGGG
GGGGGGNNNNNNNNNNNNNNNNGNNNNGNGNNNGNNNNGNGGGGGGNGNN
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGNGGGGGNNGGGG
GGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGNGGGGGNNGGGGGGGGGGG
NGGGGGGGGGGGGGGGGGGNGGGGGNGGGGGGGNGNGGGGGGGGGGGGGG
GTTTGGNGGGGGGGGGGGGGNGGGGNGGGGGGGGGGNNGNGGCGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_c18.g1 MSMg01no272_c18.g1 CHROMAT_FILE:
MSMg01no272_c18.g1 PHD_FILE: MSMg01no272_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:15 2005
         (287 letters)



>mm_chr1_26911379_26912065
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctatttaccttgttcagttaagaaagttgtgatagaagaaattagaacatttatctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctatttaccttgttcagttaagaaagttgtgatagaagaaattagaacatttatctct 260

                                                                       
Query: 61  ctttaagggaattagggatataatttaggtagggagaagagggaatgtaagtttaagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ctttaagggaattagggatataatttaggtagggagaagagggaatgtaagttcaagaaa 320

                                                                       
Query: 121 gagataatggatagacttcctgacaagactcttattaatgctattacatgctgagtaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagataatggatagacttcctgacaagactcttattaatgctattacatgctgagtaaaa 380

                                                                       
Query: 181 gatagtaaaggtagtgtcttagtcattgttctattgagataaagaaatggcatgagtggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatagtaaaggtagtgtcttagtcattgttctattgagataaagaaatggcatgagtggc 440

                                                          
Query: 241 atgagttttattaaaagacctaaacctcaagagactggaggcctcag 287
           ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 atgagttttataaaaagacctaaacctcaagagactggaggcctcag 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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