BAC Information

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BAC

Clone NameMSMg01-272F22
Chromosome1 (Build37)
Map Location 180,111,878 - 180,112,167
singlet/doubletsinglet
Overlap genenone
Upstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262
Downstream gene5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, Smyd3, LOC666354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272F22.T7 (MSMg01no272_f22.b1)MSMg01-272F22.TJ (MSMg01no272_f22.g1)
ACCAG411674AG411675
length752749
length of high quality
(start - end)
374 (379 - 752)291 (71 - 361)
definitionCHROMAT_FILE: MSMg01no272_f22.b1 PHD_FILE: MSMg01no272_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:30 2005CHROMAT_FILE: MSMg01no272_f22.g1 PHD_FILE: MSMg01no272_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:30 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ATTGAATTTGCAGATTGCTTTTGGTAAGATGGCCATTTTTACTATTTTAA
TCCTGCAGACTAATGACCACGTGAGATCTTTCCATCACAGGGGAAATTTT
CCTGAACAGAACACTAGTGGCTCAAGTTCTAAGATCAACTATTGACAAAT
GGGATCTCATAAAATTGAAAAGCTTTTGTAAGGCAAAGAACACTGTCAAT
AAGACAAAACAGCAACCAACAGATTGGGAAAAGATCTTTACCAACCCTAC
ATCTGATAGAGAGCTAATATCCAATATATACAAAGAACTCAAGAAGTTAG
ACTCCAGAGATATCTTATAACCCTATTAAAAATGGGGTACAGAGCTAAAC
AAAGAATTTTCAACTGAGGAATCTCAAATGGCTGAGAAGCACCTAAAGAA
ATGTTCAACATCCTTAGTCATTAGGGAAATGCAAATCAAAACGACCCTGA
GATTCCATCTCACACCAGTCAAAATAACTAAGATCAAAAACTCAAATGAC
AGCAAAAACTGGTGAGGATGCAGAGAAAGAGGAACACTCCTCCATTGCTG
GTGGGATTGCAAGCTGGTACAACCACTCTGGAAGACAGTTAGGCAGTTCC
TCAGAAAACTGAAAATAGTTCTACCTCAGGACCCAGCTATACCACTACTG
GGCATATAACCAAAAGATGCTCCAACATATAAAAAGGACACATGTTCCAC
CA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGACAAACTCAGTTGAATTTGAAGCCAG
TATTGAAGAATAACATCCAGTTTCACTAGTAGATCTTGAGACTGTCCATT
TTCCATTTCAAAAGTGCCAGCCACTCAAAGAGATAGCACAGCTTGAAATG
CCAAGGGATCCCTTTTAATCTGCATGTCTTTAGTTGTGGAGTGACTTTTG
TCAGTGATGACCACCAGCTTGTATCTTCCCAGATGGAAAGGAAAGTGTTT
GGTAAAGTCTTTGAAAATAGCTGCTCATGTTACCACTACTGTCTGTGTTT
GATGGCAGTGTTTTTTATCCCCCACCCCCCTAGGCTAGTGGGGGTTTTGT
TGTTTTTAGAAGCAGATTTTTTCTTAGAAAACTAGTCTTTGTTTGAATTC
CCCATCCACTTGTGCTGCCCGGCTCCTCAGAAGAGGGATTAAACCTTTTA
AAGAAAAAAAAGTCCTGTATTTATTTTCCTTTATTTTTAATTTTCTGTGT
ATGGGAATGCTAGCTGCAGGTACATCTGCTATCACATGCATGCAGTACTG
TTAGAGGCCAGAAGAGAGCGTTGGATTCCCCAGAACTGGAGTTACCATGA
ATAATCATGTGAGCAATGGGAATCAAATTATTCTTTTTTTTTTTCTTTTG
ATTTTTCAAGATAAAGTTTTACTGTGTGGCCCTGGCTGTCCTGAAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_f22.g1 MSMg01no272_f22.g1 CHROMAT_FILE:
MSMg01no272_f22.g1 PHD_FILE: MSMg01no272_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:30 2005
         (291 letters)



>mm_chr1_180111678_180112368
          Length = 691

 Score =  460 bits (238), Expect = e-134
 Identities = 277/290 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgacaaactcagttgaatttgaagccagtattgaagaataacatccagtttcactagt 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 actgactaactcagttgaatttgaagccagtattgaagaataacatccagtttcactagt 431

                                                                       
Query: 61  agatcttgagactgtccattttccatttcaaaagtgccagccactcaaagagatagcaca 120
           ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 430 agatcttgagactgtccattttccatttccaaagtaccagccacccaaagagatagcaca 371

                                                                       
Query: 121 gcttgaaatgccaagggatcccttttaatctgcatgtctttagttgtggagtgacttttg 180
           ||||| |||| |||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 370 gcttggaatgtcaagggatcccttttaatctgcatgtctttagttttggaatgacttttg 311

                                                                       
Query: 181 tcagtgatgaccaccagcttgtatcttcccagatggaaaggaaagtgtttggtaaagtct 240
           | |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 310 ttagtgatgaccaccaacttgtgtcttcccagatggaaaggaaagtgtttggcaaagtct 251

                                                             
Query: 241 ttgaaaatagctgctcatgttaccactactgtctgtgtttgatggcagtg 290
           ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttgaaaatagcagctcatgttaccactactgtctgtgtttgatggcagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)